Protein Data Bank (PDB) Viewer

Visualization of proteins directly from the PDB database or from a .pdb file.

Visualization example with protein 13PK:

	Ball and Stick	Backbone	Space-Filling	Ribbon	Cartoon
CPK
Structure
Shapely
Sequence
Temperature

Overview over the whole PDB viewer:

Features

• Load list of proteins from the RCSB PDB RESTful Web Service interface
• Load protein data in the Protein Data Bank (PDB) format from RCSB
• Save protein data as .pdb file
• Load protein data from a .pdb file
• Color modes:
  • CPK
  • Structure
  • Shapely
  • Sequence
  • Temperature
• Styles
  • Ball and Stick
  • Backbone
  • Space-Filling
  • Ribbon
  • Cartoon
• Change background color
• Proportional atom radius (only for Ball and Stick, Backbone and Ribbon style)
• Side chain connections in Ball and Stick style
• Protein sequence and secondary structure in text fields
• Mark / highlight atoms of amino acids in the protein graph and the sequence fields (except in the Cartoon style)
• Rotate 3D protein graph around its center
• Zoom in and out
• Show simple statistics about the protein
• Filter list of proteins by PDB id, classification and title

Requirements

• Internet connection to initially load and to update the protein list
• Internet connection to load protein data from RCSB
• Java 1.8+

Contribution

Feel free to submitting issues and pull requests.

Authors

• Sebastian Penhouët - Initial work - Spenhouet

License

This project is licensed under the MIT License - see the LICENSE file for details

Acknowledgments

• Spline implementation from: Java-Gaming.org - tusaki - 2D & 3D Spline