Standalone program to download PDB Symbol files for debugging without WDK
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Jun 20, 2019 - C
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pdb-database
Here are 20 public repositories matching this topic...
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
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Oct 21, 2021 - C++
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
python structural-biology protein-structure molecular-dynamics computational-chemistry amino-acids kinases pdb-database gpcr gpcr-numbering
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Nov 28, 2024 - Python
A Python script to map PDB ID + chain ID to UniProt ID.
bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure
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Mar 7, 2024 - Python
A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest
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Oct 3, 2023 - Python
Benchmarks for reading and interpreting mmCIF files
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Aug 30, 2021 - Python
Visualization of proteins directly from the PDB database or from a .pdb file.
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Feb 9, 2018 - Java
Guia de programas e ferramentas de bioinformática e química computacional
python linux machine-learning bioinformatics molecular-dynamics biopython genbank pymol shell-script drug-design ncbi-blast molecular-modeling pdb-database alignment-algorithm
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Apr 28, 2022
Fixes mmCIF protein structure files
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Mar 24, 2023 - Python
基于modeller官网脚本进行开发的序列比对脚本
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Jun 12, 2021 - Python
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
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May 18, 2021 - Python
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Jul 11, 2021 - R
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
python vim emacs sublime-text protein-structure molecular-graphics pymol cloud-computing literate-programming vsc aca pdb-database colab-notebook ghosttext
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May 25, 2024
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
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Mar 15, 2019 - Python
Mapping Pharos Targets to PDB IDs
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Jun 5, 2019 - Jupyter Notebook
A PDB Viewer Application implemented completely in JavaFX
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Feb 2, 2018 - Java
uwseds-group-OPMxplore created by GitHub Classroom
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Dec 14, 2017 - Jupyter Notebook
Modules for PDB Data parsing and Ramachandran Analysis.
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Feb 16, 2024 - Python
Various statistics on the Protein Data Bank
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Feb 11, 2024 - HTML
This script enables users to filter through PDB archive in order to obtain simple data from each file.
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Jan 10, 2023 - Perl
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