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Chore/restructure_repo #29

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merged 21 commits into from
May 7, 2021
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12550fd
chore: update data directory in all scripts
IVANDOMENZAIN May 5, 2021
afd1767
chore: update gitignore
IVANDOMENZAIN May 5, 2021
cc42844
chore: rename data folder
IVANDOMENZAIN May 5, 2021
29f94aa
chore: delete scripts inherited from yeastGEM repo
IVANDOMENZAIN May 5, 2021
7a67cd5
chore: relocate model files
IVANDOMENZAIN May 5, 2021
ae3bb27
chore: relocate model files
IVANDOMENZAIN May 5, 2021
7511de6
chore: update scripts folder name
IVANDOMENZAIN May 5, 2021
693a49d
chore: fix model name (reticuline)
IVANDOMENZAIN May 5, 2021
6d34e4c
chore: fix model name
IVANDOMENZAIN May 5, 2021
f3bb92b
fix: revert undesired changes to script
IVANDOMENZAIN May 5, 2021
94a19b8
chore: relocate yield plots image files
IVANDOMENZAIN May 6, 2021
2824c5d
chore: relocate production capabilities results
IVANDOMENZAIN May 7, 2021
b538038
chore: relocate files for validation of predictions
IVANDOMENZAIN May 7, 2021
7bd7cb3
chore: relocate files for validation of predictions
IVANDOMENZAIN May 7, 2021
05588e4
fix: gene enrichment analysis (incomplete)
IVANDOMENZAIN May 7, 2021
75752f4
chore: delete some scripts
IVANDOMENZAIN May 7, 2021
86b7a7d
chore: upload heterologous pathways txt file
IVANDOMENZAIN May 7, 2021
b78f943
chore: delete unnecessary model files
IVANDOMENZAIN May 7, 2021
0118134
chore: relocate all targets results
IVANDOMENZAIN May 7, 2021
2d9b7c1
chore: relocate results and scripts for production_targets analysis
IVANDOMENZAIN May 7, 2021
dd5781d
chore: update targetsMatrix path in all analysis scripts
IVANDOMENZAIN May 7, 2021
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4 changes: 3 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -67,4 +67,6 @@ helpsearch*/
*fluxLeak_targets.txt
*.js
*.map
*.css
*.css
*.pdf
*.docx
Binary file removed ComplementaryData/FFAs/data of FFAs.xlsx
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Binary file removed ComplementaryData/chemicals_info.xlsx
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122 changes: 0 additions & 122 deletions ComplementaryScripts/increaseVersion.m

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18 changes: 0 additions & 18 deletions ComplementaryScripts/loadYeastModel.m

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11 changes: 0 additions & 11 deletions ComplementaryScripts/loadYeastModel.py

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106 changes: 0 additions & 106 deletions ComplementaryScripts/missingFields/GetMNXID.m

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46 changes: 0 additions & 46 deletions ComplementaryScripts/missingFields/addConfidenceScores.m

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39 changes: 0 additions & 39 deletions ComplementaryScripts/missingFields/addGeneNames.m

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