You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I get this error when I run the 1.1.hebbe pipeline:
[14/b77668] NOTE: Error submitting process 'trim_galore (E1_S9_L001)' for execution -- Execution is retried (2)
[95/49aaee] NOTE: Error submitting process 'trim_galore (E1_S9_L001)' for execution -- Execution is retried (3)
ERROR ~ Error executing process > 'trim_galore (E1_S9_L001)'
Caused by:
Failed to submit process to grid scheduler for execution
Command executed:
sbatch .command.run
Command exit status:
1
Command output:
sbatch: error: rejecting job, too much memory requested for 2 cores. You must use -C MEMXXX or increase number of requested cores instead of using --mem: pn_min_memory = 65536
sbatch: error: Batch job submission failed: Invalid generic resource (gres) specification
Hello,
I think there's a problem with the memory allocation of Trim galore (and possibly the other steps):
rnaseq/conf/hebbe.config
Line 23 in 18849b0
I get this error when I run the 1.1.hebbe pipeline:
It's fixed by adding this to the config_TEMPLATE:
Maybe the withName syntax is wrong in the hebbe.config?
I assume that what I write in the config_TEMPLATE overwrites what's stated in the hebbe.config
I ran
revision: [0dc48d498f 1.1.hebbe]
The text was updated successfully, but these errors were encountered: