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Translational Bioinformatics Unit, Navarrabiomed

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  1. singlecelldb singlecelldb Public

    An actionable database of publicly available single-cell RNA-seq data

    Jupyter Notebook 41 9

  2. GeneSetCluster GeneSetCluster Public

    a tool for summarizing and integrating gene-set analysis results

    HTML 16 4

  3. scbert-reusability scbert-reusability Public

    Reusability report of scBERT

    Python 12 2

  4. TransformersInGenomicsPapers TransformersInGenomicsPapers Public

    A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that …

    Python 6 1

  5. LIBRA LIBRA Public

    Machine Translation between paired Single Cell Multi Omics Data

    HTML 5 4

  6. RNASEQ-Pair-end-Pipeline RNASEQ-Pair-end-Pipeline Public

    Description of the different step in Pipeline RNAseq Pair End. From fastq to count tables. Then normalize and obtain the genes highly differentiated.

    R 3

Repositories

Showing 10 of 32 repositories
  • scbert-reusability Public

    Reusability report of scBERT

    TranslationalBioinformaticsUnit/scbert-reusability’s past year of commit activity
    Python 12 GPL-3.0 2 1 0 Updated Jul 14, 2024
  • GeneSetCluster2.0 Public

    GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis

    TranslationalBioinformaticsUnit/GeneSetCluster2.0’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 18, 2024
  • TransformersInGenomicsPapers Public

    A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that demonstrate the application of transformer-based models in genomics, providing users with a valuable resource to navigate this rapidly evolving field.

    TranslationalBioinformaticsUnit/TransformersInGenomicsPapers’s past year of commit activity
    Python 6 1 0 0 Updated Jun 17, 2024
  • A-Primer-on-Transformers-in-Single-Cell-Genomics Public
    TranslationalBioinformaticsUnit/A-Primer-on-Transformers-in-Single-Cell-Genomics’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Jun 14, 2024
  • ClustAll Public
    TranslationalBioinformaticsUnit/ClustAll’s past year of commit activity
    R 0 0 0 0 Updated Mar 31, 2024
  • DockerSeminar Public
    TranslationalBioinformaticsUnit/DockerSeminar’s past year of commit activity
    R 0 0 0 0 Updated Feb 12, 2024
  • GSE198256_erxercise Public
    TranslationalBioinformaticsUnit/GSE198256_erxercise’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 30, 2024
  • jesteg.github.io Public Forked from jesteg/site-jesper.github.io
    TranslationalBioinformaticsUnit/jesteg.github.io’s past year of commit activity
    0 1 0 0 Updated Dec 10, 2023
  • ClustALL_AD Public

    ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis.

    TranslationalBioinformaticsUnit/ClustALL_AD’s past year of commit activity
    R 1 0 0 0 Updated Nov 17, 2023
  • bcell Public

    Gene Regulatory Network of early B cell differentiation in Humans

    TranslationalBioinformaticsUnit/bcell’s past year of commit activity
    R 0 0 0 0 Updated Jul 4, 2023
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