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OK, now that I understand how the options framework is setup...
I switched the order of the s:parse_name and s:parse_options calls in the init_bundle function so that user options will override defaults set from the bundle name. The three options that can now be set are 'rtp', 'name' and 'uri'. the 'name' option is handy if you want to bundle to be cloned to a different directory than the repositories name. the 'uri' option is probably most useful for allowing you to clone ssh:// repos, you can specify a bundle name like 'gmarik/vundle' and pass { 'uri' : 'ssh://git@github.com/gmarik/vundle' } to allow you to clone your push accessible repo.
I hope this isn't an already supported feature that I just couldn't figure out how to use.