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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1k 255

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 839 174

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 223 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 182 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 94 repositories
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,015 255 324 1 Updated Oct 30, 2024
  • MicrobiomeProfiler Public

    🦠 A shiny package for microbiome functional enrichment analysis

    YuLab-SMU/MicrobiomeProfiler’s past year of commit activity
    R 36 7 0 1 Updated Oct 30, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Oct 30, 2024
  • ReactomePA Public

    Reactome Pathway Analysis

    YuLab-SMU/ReactomePA’s past year of commit activity
    R 37 10 15 0 Updated Oct 30, 2024
  • GOSemSim Public

    ⛳ GO-terms Semantic Similarity Measures

    YuLab-SMU/GOSemSim’s past year of commit activity
    R 59 26 15 0 Updated Oct 30, 2024
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 115 36 23 2 Updated Oct 30, 2024
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker’s past year of commit activity
    R 223 74 102 0 Updated Oct 30, 2024
  • ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    YuLab-SMU/ggtree’s past year of commit activity
    R 839 174 164 1 Updated Oct 30, 2024
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle’s past year of commit activity
    R 7 0 0 0 Updated Oct 29, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 230 65 124 0 Updated Oct 29, 2024

Most used topics

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