handle case where no contigs are generated

adamewing · Dec 8, 2016 · 6ee1f8e · 6ee1f8e
1 parent e72b1b1
commit 6ee1f8e
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/bin/addsv.py b/bin/addsv.py
@@ -406,6 +406,7 @@ def makemut(args, bedline, alignopts):
 
         if len(contigs) == 0:
             sys.stderr.write("WARN\t" + now() + "\t" + mutid + "\tgenerated no contigs, skipping site.\n")
+            return None, None
 
         trn_contigs = None
         if is_transloc: