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Popular repositories Loading

  1. dna-alignment-pipeline dna-alignment-pipeline Public

    DNA alignment pipeline tailored to IGMM compute cluster

    Perl 2

  2. base-space-download-fastq-with-checksums base-space-download-fastq-with-checksums Public

    Download FASTQ files from Illumina BaseSpace via the CLI with checksums

    Nextflow 2

  3. rnaseq rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

    Nextflow 1

  4. nanoseq nanoseq Public

    Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    Nextflow 1

  5. somalier somalier Public

    Forked from brentp/somalier

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs

    Nim

  6. merge_fastq merge_fastq Public

    Forked from lconde-ucl/merge_fastq

    Nextflow pipeline to merge FastQ files from different lanes

    Nextflow 1