Alignment and variant calling pipeline designed for high throughput sequencing of genomic DNA, either whole genome or targeted. An adaptation of the Genome Analysis Toolkit Best Practices (https://www.broadinstitute.org/gatk/guide/best-practices?bpm=DNAseq) tailored to the University of Edinburgh's Institute of Genetics and Molecular Medicine compute cluster.
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ameynert/dna-alignment-pipeline
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DNA alignment pipeline tailored to IGMM compute cluster
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