Use pip directly in post_install, do not use --user flag to ensure it…

…s installed in the PREFIX/bin folder
appliedbinf · Feb 5, 2020 · 26c1768 · 26c1768
1 parent 8299e08
commit 26c1768
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/installer/post_install.sh b/installer/post_install.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-${1}/bin/python -m pip install --upgrade --trusted-host pip.appliedbinf.com --extra-index-url https://cdc:smoredInstaller@pip.appliedbinf.com SMOREd
+${1}/bin/pip install --upgrade --trusted-host pip.appliedbinf.com --extra-index-url https://cdc:smoredInstaller@pip.appliedbinf.com SMOREd
 echo "alias smored=${1}/bin/smored" >> ~/.bashrc
 
 echo ""