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Update README.md
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SaberHQ authored Jun 17, 2019
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Expand Up @@ -324,7 +324,7 @@ __Example runs:__
4 If you want to simulate ten thousands cDNA/directRNA reads from mouse reference transcriptome
`./simulator.py transcriptome -rt Mus_musculus.GRCm38.cdna.all.fa -rg Mus_musculus.GRCm38.dna.primary_assembly.fa -c mouse_cdna -e abundance.tsv -n 10000`

4 If you want to simulate five thousands cDNA/directRNA reads from mouse reference transcriptome without modeling intron retention
5 If you want to simulate five thousands cDNA/directRNA reads from mouse reference transcriptome without modeling intron retention
`./simulator.py transcriptome -rt Mus_musculus.GRCm38.cdna.all.fa -c mouse_cdna -e abundance.tsv -n 5000 --no_model_ir`

## Explanation of output files
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