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post-rebase #38

Merged
merged 280 commits into from
Jun 27, 2022
Merged

post-rebase #38

merged 280 commits into from
Jun 27, 2022

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skim2257
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mkazmier and others added 30 commits April 16, 2020 12:06
@mkazmier
removed old structure set code
8383fe6
@mkazmier
fixed label handling in image statistics computation
f9144f0
@mkazmier
fixed label handling in image statistics computation
12eecd1
@mnakano
[In Progress] Adding documentation to ops.py
0463aca
@mnakano
Merge branch 'master' of https://github.com/bhklab/imgtools
1286866
@mkazmier
added support for dynamic path specification in writers
57b944e
@mkazmier
image CSV loader now accepts pandas DataFrames
5f25bfd
@mkazmier
Merge branch 'master' of https://github.com/bhklab/imgtools
aee62cb
@mkazmier
fixed indentation error
61cec9c
@mkazmier
fixed index column handling in ImageCSVLoader
ac9b8d1
@mkazmier
Revert "fixed index column handling in ImageCSVLoader"
678fc6e 
This reverts commit ac9b8d1.
@mkazmier
fixed index column handling in ImageCSVLoader
ccb2673
@mkazmier
fixed index column handling in ImageCSVLoader
45af80b
@mkazmier
ImageCSVLoader now returns correct keys
9000918
@mkazmier
ImageCSVLoader now correctly handles globbing in paths
61e31e2
@mkazmier
more informative exception handling in pipeline
2d615b2
@mkazmier
pipeline can now warn on error instead of raising exception
35e686d
@mkazmier
[Docs] Cleaned up extra whitespace in ops.py
708a388
@mkazmier
Added convenience method to get all ops in a pipeline
248e096
@mkazmier
Fix empty array check in structure set conversion
f28cbdf
@mkazmier
Fix segmentation to label image conversion
404793b
@mkazmier
Update README.md
05da815
@mkazmier
Fix spurious mixin in ops
8e19d06
@mkazmier
Fix type error when passing Numpy array to rotate
53223da
@mkazmier
[Bugfix] Fix slice number rounding when generating a mask from RTSTRUCT
919ea49
@mkazmier
Merge branch 'master' of https://github.com/bhklab/imgtools
93ac324
@mkazmier
Fix crop size issue in crop_to_bounding_box
59c0e92
@mkazmier
Make imports easier
1843193
@mkazmier
Improved handling of regular expressions in structure set
5532e0e
@mkazmier
Fix slice matching issue when generating binary mask from RTStruct
f2b74e9
fishingguy456 and others added 28 commits June 23, 2022 14:33
@fishingguy456
pandas error
ce5ab36 
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@skim2257
Fixed read_dicom_auto
37baa03 
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@skim2257
skips series check if seris is None
8251c41 
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@skim2257
updated readme to reflect v0.4 changes
d9f5372 
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@skim2257
updated readme
7223eaa 
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@fishingguy456
minor change
f69a2dc 
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@skim2257
remove .idea
28383e9 
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@skim2257
remote .idea
650899d 
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@skim2257
Merge branch 'kevin-branch' of github.com:bhklab/imgtools into kevin-…
6a02c9a 
…branch

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@fishingguy456
git ignore
5448d28 
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@fishingguy456
Merge branch 'kevin-branch' of https://github.com/bhklab/med-imagetools…
77e210a 
… into kevin-branch

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@fishingguy456
refactor nnunetutils to nnunet
154a3a5 
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@skim2257
updated versions
f9ce23f 
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@skim2257
resolved conflicts
6c60267 
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@mkazmier @skim2257
new experimental segmentation class
78b9ebc
@mkazmier @skim2257
minor fixes in segmentation module
1cc2ecf
@mkazmier @skim2257
matching roi names in StructureSet.to_segmentation is now case-insens…
49a431d 
…itive
@mkazmier @skim2257
StructureSet now correctly handles ROIs with no contour data
c70944f
@mkazmier @skim2257
Segmentation object now correctly handles indexing
ab79203
@mkazmier @skim2257
Fix empty array check in structure set conversion
729e68a
@mkazmier @skim2257
[Bugfix] Fix slice number rounding when generating a mask from RTSTRUCT
c10b3ca
@mkazmier @skim2257
Fix slice matching issue when generating binary mask from RTStruct
a7e513f
@skim2257
CLI "autonew"
00d7221 
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@fishingguy456 @skim2257
changed all mutable defaults to None
cfb5da8 
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@skim2257
remote .idea
76a9436 
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@fishingguy456 @skim2257
git ignore
640bda6 
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@skim2257
Merge branch 'kevin-branch' of github.com:bhklab/med-imagetools into …
969ae4e 
…kevin-branch
@skim2257
Merge branch 'master' of github.com:bhklab/med-imagetools into kevin-…
8494ce7 
…branch
@skim2257 skim2257 merged commit 7dcea06 into master Jun 27, 2022
@skim2257 skim2257 deleted the kevin-branch branch July 8, 2022 21:05
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5 participants
@skim2257 @mkazmier @mnakano @Vishwesh4 @fishingguy456