-
Notifications
You must be signed in to change notification settings - Fork 3.3k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
2024.4 #50977
2024.4 #50977
Conversation
WalkthroughThe pull request updates the Changes
Poem
Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media? 🪧 TipsChatThere are 3 ways to chat with CodeRabbit:
Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. CodeRabbit Commands (Invoked using PR comments)
Other keywords and placeholders
CodeRabbit Configuration File (
|
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/biobb_structure_checking/meta.yaml (1)
Line range hint
1-67
: PR title should be updated to follow Bioconda guidelines.While the recipe update itself looks good and adheres to Bioconda guidelines, the PR title "2024.4" doesn't follow the recommended format. As per the PR objectives, the title should start with "Update" for package updates.
Suggested PR title: "Update biobb_structure_checking to 3.13.5"
Other observations:
- The package is appropriately related to biological sciences, making it suitable for Bioconda.
- The inclusion of
run_exports
in the recipe is good practice and aligns with the recommendations in the PR objectives.@PauAndrio Could you please update the PR title to follow the Bioconda guidelines?
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/biobb_structure_checking/meta.yaml (1 hunks)
🔇 Additional comments (3)
recipes/biobb_structure_checking/meta.yaml (3)
2-2
: Version update looks good.The version has been correctly updated from 3.13.4 to 3.13.5, which is consistent with a minor patch update.
Line range hint
1-67
: No other unexpected changes detected.I've reviewed the entire file, and I can confirm that no other unexpected changes were made. This is good practice for a version bump, as it minimizes the risk of unintended side effects.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
10-10
: SHA256 checksum has been updated.The SHA256 checksum has been updated, which is expected with a new version release. However, it's crucial to verify that this checksum corresponds to the correct source package for version 3.13.5.
Please run the following script to verify the checksum:
No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped. |
Describe your pull request here
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add label
command.@bioconda/core
in a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
run_exports
(see here for the rationale and comprehensive explanation).Add a
run_exports
section like this:with
...
being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
{{ pin_subpackage("myrecipe", max_pin="x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}
(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}
while replacing
"myrecipe"
with eithername
if aname|lower
variable is defined in your recipe or with the lowercase name of the package in quotes.Bot commands for PR management
Please use the following BiocondaBot commands:
Everyone has access to the following BiocondaBot commands, which can be given in a comment:
@BiocondaBot please update
@BiocondaBot please add label
please review & merge
label.@BiocondaBot please fetch artifacts
You can use this to test packages locally.
Note that the
@BiocondaBot please merge
command is now depreciated. Please just squash and merge instead.Also, the bot watches for comments from non-members that include
@bioconda/<team>
and will automatically re-post them to notify the addressed<team>
.Summary by CodeRabbit
biobb_structure_checking
package to 3.13.5.