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Expand notes. Build and test #2358: Commit 139b9fd pushed by bredelings
January 15, 2025 12:58 In progress infer-cmdline-types
infer-cmdline-types
January 15, 2025 12:58 In progress
Initial code to infer types for a function. Build and test #2357: Commit 7dd19c7 pushed by bredelings
January 15, 2025 12:18 38m 50s infer-cmdline-types
infer-cmdline-types
January 15, 2025 12:18 38m 50s
Make multi_freq prior a bit tighter. Build and test #2356: Commit c798969 pushed by bredelings
January 15, 2025 04:32 54m 52s master
master
January 15, 2025 04:32 54m 52s
Initial code to infer types for a function. Build and test #2355: Commit a3d7965 pushed by bredelings
January 15, 2025 04:32 47m 47s infer-cmdline-types
infer-cmdline-types
January 15, 2025 04:32 47m 47s
Align and simplify 'bali-phy type' output Build and test #2354: Commit d6403de pushed by bredelings
January 12, 2025 03:00 49m 52s master
master
January 12, 2025 03:00 49m 52s
Show the type of a term given 'bali-phy type term' Build and test #2353: Commit c9e51b0 pushed by bredelings
January 12, 2025 02:51 44m 52s master
master
January 12, 2025 02:51 44m 52s
Stop testing on gcc-11 Build and test #2352: Commit 6d46f58 pushed by bredelings
January 11, 2025 22:34 29m 16s master
master
January 11, 2025 22:34 29m 16s
Fall back to scaling and squaring if the decomposition-based method h… Build and test #2351: Commit 7bb4ef6 pushed by bredelings
January 11, 2025 22:09 7m 31s master
master
January 11, 2025 22:09 7m 31s
Make the eigensolver fail under certain conditions Build and test #2350: Commit 87def3d pushed by bredelings
January 11, 2025 21:52 6m 42s master
master
January 11, 2025 21:52 6m 42s
Use Eigen eigenvalue solution directly Build and test #2349: Commit c7c52ab pushed by bredelings
January 11, 2025 21:19 8m 11s master
master
January 11, 2025 21:19 8m 11s
Make EigenValues no longer an Object Build and test #2348: Commit 675de9d pushed by bredelings
January 11, 2025 20:44 24m 39s master
master
January 11, 2025 20:44 24m 39s
Show the decomposition of Markov objects Build and test #2347: Commit e1ae023 pushed by bredelings
January 11, 2025 18:40 29m 39s master
master
January 11, 2025 18:40 29m 39s
Allow using the existing eigensystem stuff for reversible models. Build and test #2346: Commit 6badc81 pushed by bredelings
January 11, 2025 17:57 15m 55s master
master
January 11, 2025 17:57 15m 55s
Allow rate matrices to cache decompositions. Build and test #2345: Commit b5e3d17 pushed by bredelings
January 11, 2025 17:28 31m 52s master
master
January 11, 2025 17:28 31m 52s
Start generalizing default declarations for NamedDefaults Build and test #2344: Commit 6654dc7 pushed by bredelings
January 9, 2025 02:13 28m 0s master
master
January 9, 2025 02:13 28m 0s
Add multiFrequencyCovarion' to take a distribution on letters. Build and test #2343: Commit 21ec043 pushed by bredelings
January 5, 2025 04:06 23m 44s master
master
January 5, 2025 04:06 23m 44s
Add notes about rate scaling for multifreq+covarion. Build and test #2342: Commit 4799256 pushed by bredelings
January 5, 2025 01:42 30m 50s master
master
January 5, 2025 01:42 30m 50s
Add note to function geometric Build and test #2341: Commit 6416e14 pushed by bredelings
January 4, 2025 03:44 38m 57s master
master
January 4, 2025 03:44 38m 57s
Make the peel_leaf_branch_toward_root( ) code handle both cases. Build and test #2340: Commit e4d3dc4 pushed by bredelings
January 2, 2025 19:20 33m 21s master
master
January 2, 2025 19:20 33m 21s
Handle sparse likelihoods. Build and test #2339: Commit 4fa50da pushed by bredelings
January 2, 2025 18:32 17m 55s master
master
January 2, 2025 18:32 17m 55s
Implement speedup for sparse CLVs. Build and test #2338: Commit 9cee71d pushed by bredelings
January 2, 2025 06:15 6m 13s master
master
January 2, 2025 06:15 6m 13s
Update meson build files for deprecations. Build and test #2337: Commit 6366d5f pushed by bredelings
January 2, 2025 03:47 30s 3.6
3.6
January 2, 2025 03:47 30s
Remove using std::bitset Build and test #2336: Commit 957d3bd pushed by bredelings
January 2, 2025 03:42 33s 3.6
3.6
January 2, 2025 03:42 33s
Implement speedup for sparse CLVs. Build and test #2335: Commit 9cee71d pushed by bredelings
January 2, 2025 02:28 7m 26s sparse-likelihoods
sparse-likelihoods
January 2, 2025 02:28 7m 26s
Synchronize fixed-A and variable-A versions of peel_leaf_branch* Build and test #2334: Commit f9c0f3e pushed by bredelings
January 2, 2025 02:19 6m 27s sparse-likelihoods
sparse-likelihoods
January 2, 2025 02:19 6m 27s