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Release 4.0-beta16

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@github-actions github-actions released this 23 Nov 20:18
  • Speed: further speed up tree operations.
  • Output: simplify results from ancestral sequence reconstruction.
  • Input: allow defining models using multiple lines in control files.
  • Models:
    • Speed up and improve RNA editing model.
    • Allow '--tree=~uniform_tree(taxa,gamma(0.5,2/length(taxa)))'
    • Allow Yule, coalescent, and uniform_rooted tree distributions.
  • MCMC:
    • preliminary inference of rooted trees with alignments (NNI only, no SPR)
    • Use multiple transition kernels for uniform_int distribution.
    • Allow hand-written Metropolis-Hastings proposals for numbers/atomic objects.
  • Bug fixes:
    • Fix crashes crashes on startup (in module writing/reading).
  • Tests:
    • Refactor tests so that ninja test runs each testsuite test separately.
    • Add CI for ninja test.
  • Haskell:
    • Fix [1.5 .. ] and ['a' ..] work for floating point.