Release 4.0-beta16
Pre-release
Pre-release
- Speed: further speed up tree operations.
- Output: simplify results from ancestral sequence reconstruction.
- Input: allow defining models using multiple lines in control files.
- Models:
- Speed up and improve RNA editing model.
- Allow '--tree=~uniform_tree(taxa,gamma(0.5,2/length(taxa)))'
- Allow Yule, coalescent, and uniform_rooted tree distributions.
- MCMC:
- preliminary inference of rooted trees with alignments (NNI only, no SPR)
- Use multiple transition kernels for uniform_int distribution.
- Allow hand-written Metropolis-Hastings proposals for numbers/atomic objects.
- Bug fixes:
- Fix crashes crashes on startup (in module writing/reading).
- Tests:
- Refactor tests so that
ninja test
runs each testsuite test separately. - Add CI for
ninja test
.
- Refactor tests so that
- Haskell:
- Fix
[1.5 .. ]
and['a' ..]
work for floating point.
- Fix