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os.replace() instead of os.rename() to save checkpoint #260

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Aug 28, 2023
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os.replace() instead of os.rename() to save checkpoint #260

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2 changes: 1 addition & 1 deletion cellbender/remove_background/checkpoint.py
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Original file line number Diff line number Diff line change
Expand Up @@ -297,7 +297,7 @@ def make_tarball(files: List[str], tarball_name: str) -> bool:
for file in files:
# without arcname, unpacking results in unpredictable file locations!
tar.add(file, arcname=os.path.basename(file))
os.rename(tarball_name + '.tmp', tarball_name)
os.replace(tarball_name + '.tmp', tarball_name)
return True


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