Add --prune-after-each-image tag to fix out of disk errors on GitHub …

…action. (#575)
broadinstitute · Jul 28, 2023 · e70dfbd · e70dfbd
1 parent 9a3f311
commit e70dfbd
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diff --git a/.github/workflows/sv_pipeline_docker.yml b/.github/workflows/sv_pipeline_docker.yml
@@ -213,7 +213,8 @@ jobs:
             --image-tag ${{ needs.build_args_job.outputs.image_tag }} \
             --input-json $DOCKERS_AZURE $DOCKERS_GCP \
             --output-json $DOCKERS_AZURE $DOCKERS_GCP \
-            --disable-git-protect
+            --disable-git-protect \
+            --prune-after-each-image
           
           CHANGED=$(git diff --quiet $DOCKERS_GCP || echo True)
           echo "CHANGED=$CHANGED" >> $GITHUB_OUTPUT

diff --git a/dockerfiles/samtools-cloud/Dockerfile b/dockerfiles/samtools-cloud/Dockerfile
@@ -1,6 +1,6 @@
 # This docker file exists because we need samtools to be able to access GCS buckets
 # so we base off the sv-base-mini image, which has samtools installed, 
-# and only install GCloud SDK here for authentication purpose
+# and only install GCloud SDK here for authentication purposes.
 
 # Start with the barebones image that has samtools (a version that must support NIO) installed
 ARG MINIBASE_IMAGE=sv-base-mini:latest