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.so files not deleted from tmp dir on shutdown #4754

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lbergelson opened this issue May 9, 2018 · 5 comments
Closed

.so files not deleted from tmp dir on shutdown #4754

lbergelson opened this issue May 9, 2018 · 5 comments
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@erniebrau @kgururaj
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GenomicsDB GKL
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Engine-2Q2018

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@lbergelson
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We have a report on the forum that libgkl.so and libgenomicsdb.so are not deleting themselves on shutdown. We should fix that.

https://gatkforums.broadinstitute.org/gatk/discussion/comment/48537#Comment_48537
@droazen
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droazen commented May 9, 2018

@erniebrau and @kgururaj could you look into this when you have time? Thanks!

@droazen droazen added this to the Engine-2Q2018 milestone May 9, 2018
@erniebrau
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For GKL, it looks like we're cleaning up properly (see: code here). Might this be an issue of improper shutting down of GATK?

@lbergelson
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@erniebrau Thanks for checking. Must be incorrect shutdown then.

@kgururaj
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Fixed now

@lbergelson
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I believe this has been fixed by #4645

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@erniebrau erniebrau

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GenomicsDB GKL
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@droazen @erniebrau @lbergelson @kgururaj