Decreases number of repetitions in test and increases default repetit…

…ions
bystrogenomics · Jul 17, 2024 · e19fd27 · e19fd27
1 parent a3cec78
commit e19fd27
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/python/python/bystro/parent_of_origin/parent_of_origin.py b/python/python/bystro/parent_of_origin/parent_of_origin.py
@@ -581,7 +581,7 @@ def __init__(
         pval_method: str = "rmt4ds",
         cov_regularization: str = "Empirical",
         svd_loss: Optional[str] = None,
-        n_repeats: int = 1000,
+        n_repeats: int = 4000,
     ) -> None:
         """
         Raises

diff --git a/python/python/bystro/parent_of_origin/tests/test_parent_of_origin.py b/python/python/bystro/parent_of_origin/tests/test_parent_of_origin.py
@@ -255,5 +255,5 @@ def test_multi2_fit():
     data = generate_multivariate_data(
         beta_m, beta_p, rng, maf=0.03, n_individuals=50000, n_genotypes=1000
     )
-    model = POEMultipleSNP2()
+    model = POEMultipleSNP2(n_repeats=10)
     model.fit(data["phenotypes"], data["genotypes"], seed=2021)