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Annotation Sprint 2 Task List #273
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See #304 and #300 for dbSNP 2 - related PRs. I've tested building the resulting transformed file (100k lines), and that works well. For instance, querying chr1:10114, shows us the expected data, see attached Expected features (these will be displayed in order, from index 0 to index 10 in the next image): |
"Write replacement unit tests for overlapping values" is already done, see:
"Write replacement unit tests for overlapping values" and "Ensure global regexes applied" is done, see:
|
Remaining work moved to Sprint 3 |
Background:
Improving Annotation for Maintainability
Completion Criteria:
hg19 and hg38 database that has exact match for dbSNP and ClinVar, add back 'intergenic'
Implementation Summary
- Every track will have to ensure that it applies the replacement method which will be defined in class Tracks::build
- Document this
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