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Add modified Multi-snp and Docstring #547

Merged
merged 12 commits into from
Jul 18, 2024
Merged

Add modified Multi-snp and Docstring #547

merged 12 commits into from
Jul 18, 2024

Commits on Jul 13, 2024

  1. Add modified Multi-snp class and Docstring 

    Adds a modified multivariate version of POE for multiple SNPs

Also fixes POESingleSNP's init docstring to match parameters
    @IlhaH
    IlhaH committed Jul 13, 2024
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Commits on Jul 16, 2024

  1. Fix MultipleSNP 

    Fixes logic issue with multiple snp algorithm causing slower iterations
    @IlhaH
    IlhaH committed Jul 16, 2024
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  2. Merge branch 'bystrogenomics:master' into feature/poe_multisnp

    @IlhaH
    IlhaH authored Jul 16, 2024
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  3. Update multisnp2 test 

    Updates test call for multiplesnp2 to fit updated parameters
    @IlhaH
    IlhaH committed Jul 16, 2024
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  4. Merge branch 'feature/poe_multisnp' of https://github.com/IlhaH/bystro … 

    …into feature/poe_multisnp
    @IlhaH
    IlhaH committed Jul 16, 2024
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  5. Fix mypy issue

    @IlhaH
    IlhaH committed Jul 16, 2024
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  6. Update typing in parent_of_origin.py

    @IlhaH
    IlhaH committed Jul 16, 2024
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  7. Fix typing on test

    @IlhaH
    IlhaH committed Jul 16, 2024
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  8. Fix bugs in multisnp2 

    Modifies cov_regularization used in permutation test and calculates maf vals from genotype data instead of having it passed in
    @IlhaH
    IlhaH committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Decreases number of repetitions in test and increases default repetit… 

    …ions
    @IlhaH
    IlhaH committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. Merge branch 'master' into feature/poe_multisnp

    @IlhaH
    IlhaH authored Jul 18, 2024
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  2. Update assertions in test 

    Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
    @IlhaH @coderabbitai
    IlhaH and coderabbitai[bot] authored Jul 18, 2024
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