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add scripts from cli #680

Merged
merged 4 commits into from
Apr 22, 2019
Merged

add scripts from cli #680

merged 4 commits into from
Apr 22, 2019

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csweaver
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Fixes #678

Able to add scripts to the html from launch CLI with --scripts flag. This means it will be accessible from the CLI and from docker since docker runs the cellxgene CLI.

I reformatted the html file in the process. I could make that a separate PR, but I think it looks nicer now 😁

@csweaver csweaver requested review from bkmartinjr and ttung March 29, 2019 19:58
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csweaver commented Apr 2, 2019

Added security warning message

|___/
The --scripts flag is intended for developers to include google analytics etc. You could be opening yourself to a
security risk by including the --scripts flag. Make sure you trust the scripts that you are including.
""")
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I would further make people type in a confirmation that they understand this message before spawning the browser.

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We have users who want to deploy in a docker-deployed environment, ie, scripted startup where they have control over the deployment script. I like Tony's suggestion, but we need to ensure that the confirmation can be scripting (eg, pipe yes to it, or whatever). Alternative to "|yes": provide a --I-attest-that-really-mean-to-inject-scripts CLI param that still prints the warning, but dispenses with the interactive prompt. @ttung - thoughts?

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I should be able to add this such that | yes works.

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Either way is fine. The browser being fired up is sufficient, I believe, for bad stuff to run, so I do think the confirmation is important, at least for the first time.

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Added confirm.

yes | cellxgene launch --scripts foo --scripts bar example-dataset/pbmc3k.h5ad bypasses the confirm as expected.

@csweaver csweaver requested a review from ttung April 8, 2019 19:40
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From Sara on the security team:

I think this works. It doesn’t open up any major security concerns. I think if this becomes an ongoing ask then we should look at other options but as a one off the warning works

Looks ok, as long as we keep an eye on it.

@csweaver csweaver merged commit ea187f4 into master Apr 22, 2019
@csweaver csweaver deleted the csweaver/script-cli branch May 6, 2019 17:47
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Add option to add script files in template
3 participants