Awesome CMI DAIR

A curated list of awesome CMI DAIR libraries, software and resources.

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Web Apps

• Cross Species Mapper - Compare cognitive ontology between humans and macaques
• flowview - Explore and analyze Nipype workflow graphs

Data Visualization

• brainviewer - Portable & fast JavaScript brain imaging component
• neurothumb - Operating system level thumbnail generator for neuroimaging data formats
• NifyOne - Platform for bulk visualization of large-scale neuroimaging datasets
• quick-viz - Cookie cutter brain imaging visualization scripts

Data Processing

• Bids2Table - Efficiently index and query large-scale BIDS datasets and derivatives
• BIDS Apps
  • tsconcat - Concatenate MRI time series
  • ba-timeseries-gradients - Run BrainSpace on BIDS-compliant datasets
• yamerge - YAML file preprocessor

ML & Data Analytics

• TextKNNClassifier - Compression algorithm based k-nearest neighbors classifier for text data

Reports & Papers

• afnidespike - Python/NumPy wrapper around AFNIs despike utility functions for educational purposes
• Algonauts 2023 - Code for the CMI-DAIR submission to the Algonauts 2023 Challenge (team "BlobGPT")
• Awesome CMI DAIR - A curated list of awesome CMI DAIR libraries, software and resources

Dev tooling

• DAIR Python Template Repository - Python package boilerplate
• μnifti.h - Minimal header only NIfTI definitions and utilities