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pass on length type error, add proper pair flag #26

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MikeWLloyd wants to merge 2 commits into churchill-lab:main from MikeWLloyd:master

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MikeWLloyd commented Jan 23, 2023

Was seeing the following error in back conversion

...
if cigar_seq_length != len(sequence):
TypeError: object of type 'NoneType' has no len()

The solution to simply pass on the error is rough, but avoids the problem.

Second issue is to add FLAG_PROPER_PAIR back to BAM following conversion.

MikeWLloyd and others added 2 commits

January 23, 2023 11:25


          pass on length type error, add proper pair flag

ec54d5c


          Update g2gtools

a6200df

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