kallisto-align runs kallisto, processes its internal data object into an alignment incidence matrix, and exports the matrix in a pre-defined binary format for use with other tools such as emase or emase-zero. It is a companion utility for our bigger project that aims to provide a suite of tools to compare, contrast, or combine the results of different alignment strategies as envisioned in our alntools.
- Free software: GPLv3 license
- Documentation: http://churchill-lab.github.io/kallisto-align/
Manuscript in preparation (Expected in 2017)