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clinical-data-mining

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  1. organ-site-mapping organ-site-mapping Public

    Mapping ICD billing codes and terms to a standard ontology

    Jupyter Notebook 5 3

  2. msk-chord-figures-public msk-chord-figures-public Public

    Code and sample data for the MSK-CHORD manuscript (public version)

    Jupyter Notebook 5 3

  3. pathology_report_segmentation pathology_report_segmentation Public

    Python 1 1

  4. msk_cdm msk_cdm Public

    Prototype for new CDM repo layout

    Python 1 1

  5. ctDNA_CAT ctDNA_CAT Public

    Data and code for liquid biopsy/cancer associated thromboembolism project

    Jupyter Notebook 1

  6. NLP_Radiology_MSK_MET NLP_Radiology_MSK_MET Public

    Forked from SamanthaMcCarthy/NLP_Radiology_MSK_MET

    R

Repositories

Showing 9 of 9 repositories
  • onc_IR_LLM Public

    code for combining information retrieval (i.e. ColBERT) and LLMs for annotating oncologic EHR datasets

    clinical-data-mining/onc_IR_LLM’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 9, 2025
  • msk-chord-figures-public Public

    Code and sample data for the MSK-CHORD manuscript (public version)

    clinical-data-mining/msk-chord-figures-public’s past year of commit activity
    Jupyter Notebook 5 MIT 3 0 0 Updated Jan 27, 2025
  • ctDNA_CAT Public

    Data and code for liquid biopsy/cancer associated thromboembolism project

    clinical-data-mining/ctDNA_CAT’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 24, 2025
  • pathology_report_segmentation Public
    clinical-data-mining/pathology_report_segmentation’s past year of commit activity
    Python 1 1 1 0 Updated Nov 26, 2024
  • msk_cdm Public

    Prototype for new CDM repo layout

    clinical-data-mining/msk_cdm’s past year of commit activity
    Python 1 1 2 0 Updated Nov 26, 2024
  • variant-annotation Public
    clinical-data-mining/variant-annotation’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 23, 2024
  • allostatic_load_aacr_2024 Public
    clinical-data-mining/allostatic_load_aacr_2024’s past year of commit activity
    0 0 0 0 Updated Apr 9, 2024
  • organ-site-mapping Public

    Mapping ICD billing codes and terms to a standard ontology

    clinical-data-mining/organ-site-mapping’s past year of commit activity
    Jupyter Notebook 5 3 0 0 Updated Jan 26, 2023
  • NLP_Radiology_MSK_MET Public Forked from SamanthaMcCarthy/NLP_Radiology_MSK_MET
    clinical-data-mining/NLP_Radiology_MSK_MET’s past year of commit activity
    R 0 1 0 0 Updated Aug 20, 2021

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