-
Notifications
You must be signed in to change notification settings - Fork 49
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #340 from DBCG/data-requirements-use-translator
Add DataRequrementsProcessor from cqframework elm
- Loading branch information
Showing
8 changed files
with
350 additions
and
20 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
140 changes: 140 additions & 0 deletions
140
common/src/main/java/org/opencds/cqf/common/providers/CommonDataRequirementsProvider.java
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,140 @@ | ||
| package org.opencds.cqf.common.providers; | ||
|
|
||
| import org.cqframework.cql.cql2elm.CqlTranslatorOptions; | ||
| import org.cqframework.cql.cql2elm.LibraryManager; | ||
| import org.cqframework.cql.cql2elm.model.TranslatedLibrary; | ||
| import org.cqframework.cql.elm.requirements.fhir.DataRequirementsProcessor; | ||
| import org.hl7.fhir.r5.model.CanonicalType; | ||
| import org.hl7.fhir.r5.model.Extension; | ||
| import org.hl7.fhir.r5.model.Library; | ||
| import org.hl7.fhir.r5.model.Measure; | ||
| import org.hl7.fhir.r5.model.Meta; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
| import org.springframework.stereotype.Component; | ||
|
|
||
| import java.util.Date; | ||
| import java.util.HashSet; | ||
| import java.util.List; | ||
| import java.util.Set; | ||
|
|
||
| @Component | ||
| public class CommonDataRequirementsProvider { | ||
|
|
||
| private static final Logger logger = LoggerFactory.getLogger(CommonDataRequirementsProvider.class); | ||
|
|
||
| private static String EXTENSION_URL_PARAMETER = "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-parameter"; | ||
| private static String EXTENSION_URL_DATA_REQUIREMENT = "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-dataRequirement"; | ||
| private static String EXTENSION_URL_REFERENCE_CODE = "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-directReferenceCode"; | ||
| private static String EXTENSION_URL_LOGIC_DEFINITION = "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-logicDefinition"; | ||
| private static String EXTENSION_URL_COMPUTABLE_MEASURE = "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-measure-cqfm"; | ||
|
|
||
|
|
||
| public Measure createMeasure(Measure measureToUse, LibraryManager libraryManager, TranslatedLibrary translatedLibrary, CqlTranslatorOptions options) { | ||
|
|
||
| Library moduleDefinitionLibrary = getModuleDefinitionLibrary(measureToUse, libraryManager, translatedLibrary, options); | ||
|
|
||
| measureToUse.setDate(new Date()); | ||
| setMeta(measureToUse, moduleDefinitionLibrary); | ||
| clearMeasureExtensions(measureToUse, EXTENSION_URL_PARAMETER); | ||
| clearMeasureExtensions(measureToUse, EXTENSION_URL_DATA_REQUIREMENT); | ||
| clearMeasureExtensions(measureToUse, EXTENSION_URL_REFERENCE_CODE); | ||
| clearMeasureExtensions(measureToUse, EXTENSION_URL_LOGIC_DEFINITION); | ||
| clearRelatedArtifacts(measureToUse); | ||
| setParameters(measureToUse, moduleDefinitionLibrary); | ||
| setDataRequirements(measureToUse, moduleDefinitionLibrary); | ||
| setDirectReferenceCode(measureToUse, moduleDefinitionLibrary); | ||
| setLogicDefinition(measureToUse, moduleDefinitionLibrary); | ||
| measureToUse.setRelatedArtifact(moduleDefinitionLibrary.getRelatedArtifact()); | ||
|
|
||
| return measureToUse; | ||
| } | ||
|
|
||
| public Library getModuleDefinitionLibrary(org.hl7.fhir.r5.model.Measure measureToUse, LibraryManager libraryManager, TranslatedLibrary translatedLibrary, CqlTranslatorOptions options) { | ||
|
|
||
| Set<String> expressionList = getExpressions(measureToUse); | ||
| DataRequirementsProcessor dqReqTrans = new DataRequirementsProcessor(); | ||
|
|
||
| Library library = dqReqTrans.gatherDataRequirements(libraryManager, translatedLibrary, options, expressionList, true); | ||
| return library; | ||
| } | ||
|
|
||
| private Set<String> getExpressions(Measure measureToUse) { | ||
| Set<String> expressionSet = new HashSet<>(); | ||
| measureToUse.getSupplementalData().forEach(supData -> { | ||
| expressionSet.add(supData.getCriteria().getExpression()); | ||
| }); | ||
| measureToUse.getGroup().forEach(groupMember -> { | ||
| groupMember.getPopulation().forEach(population -> { | ||
| expressionSet.add(population.getCriteria().getExpression()); | ||
| }); | ||
| groupMember.getStratifier().forEach(stratifier -> { | ||
| expressionSet.add(stratifier.getCriteria().getExpression()); | ||
| }); | ||
| }); | ||
| return expressionSet; | ||
| } | ||
|
|
||
| private void clearMeasureExtensions(Measure measure, String extensionUrl) { | ||
| List<Extension> extensionsToRemove = measure.getExtensionsByUrl(extensionUrl); | ||
| measure.getExtension().removeAll(extensionsToRemove); | ||
| } | ||
|
|
||
| private void clearRelatedArtifacts(Measure measure) { | ||
| measure.getRelatedArtifact().removeIf(r -> r.getType() == org.hl7.fhir.r5.model.RelatedArtifact.RelatedArtifactType.DEPENDSON); | ||
| } | ||
|
|
||
| private void setLogicDefinition(Measure measureToUse, org.hl7.fhir.r5.model.Library moduleDefinitionLibrary) { | ||
| moduleDefinitionLibrary.getExtension().forEach(extension -> { | ||
| if (extension.getUrl().equalsIgnoreCase(EXTENSION_URL_LOGIC_DEFINITION)) { | ||
| measureToUse.addExtension(extension); | ||
| } | ||
| }); | ||
| } | ||
|
|
||
| private void setDirectReferenceCode(Measure measureToUse, org.hl7.fhir.r5.model.Library moduleDefinitionLibrary) { | ||
| moduleDefinitionLibrary.getExtension().forEach(extension -> { | ||
| if (extension.getUrl().equalsIgnoreCase(EXTENSION_URL_REFERENCE_CODE)) { | ||
| measureToUse.addExtension(extension); | ||
| } | ||
| }); | ||
| } | ||
|
|
||
| private void setDataRequirements(Measure measureToUse, org.hl7.fhir.r5.model.Library moduleDefinitionLibrary) { | ||
| moduleDefinitionLibrary.getDataRequirement().forEach(dataRequirement -> { | ||
| Extension dataReqExtension = new Extension(); | ||
| dataReqExtension.setUrl(EXTENSION_URL_DATA_REQUIREMENT); | ||
| dataReqExtension.setValue(dataRequirement); | ||
| measureToUse.addExtension(dataReqExtension); | ||
| }); | ||
| } | ||
|
|
||
| private void setParameters(Measure measureToUse, org.hl7.fhir.r5.model.Library moduleDefinitionLibrary) { | ||
| Set<String> parameterName = new HashSet<>(); | ||
| moduleDefinitionLibrary.getParameter().forEach(parameter -> { | ||
| if (!parameterName.contains(parameter.getName())) { | ||
| Extension parameterExtension = new Extension(); | ||
| parameterExtension.setUrl(EXTENSION_URL_PARAMETER); | ||
| parameterExtension.setValue(parameter); | ||
| measureToUse.addExtension(parameterExtension); | ||
| parameterName.add(parameter.getName()); | ||
| } | ||
| }); | ||
| } | ||
|
|
||
| private void setMeta(Measure measureToUse, org.hl7.fhir.r5.model.Library moduleDefinitionLibrary) { | ||
| if (measureToUse.getMeta() == null) { | ||
| measureToUse.setMeta(new Meta()); | ||
| } | ||
| boolean hasProfileMarker = false; | ||
| for (CanonicalType canonical : measureToUse.getMeta().getProfile()) { | ||
| if (EXTENSION_URL_COMPUTABLE_MEASURE.equals(canonical.getValue())) { | ||
| hasProfileMarker = true; | ||
| } | ||
| } | ||
| if (!hasProfileMarker) { | ||
| measureToUse.getMeta().addProfile(EXTENSION_URL_COMPUTABLE_MEASURE); | ||
| } | ||
| } | ||
|
|
||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.