Go back to mamba (times out otherwise)

csoneson · Feb 18, 2023 · dc0629a · dc0629a
1 parent 76d9631
commit dc0629a
Showing 1 changed file with 6 additions and 8 deletions.
diff --git a/.github/workflows/snakemake-run.yaml b/.github/workflows/snakemake-run.yaml
@@ -66,18 +66,16 @@ jobs:
       - name: Install snakemake (Linux)
         if: runner.os == 'Linux'
         run: |
-          #conda install -c conda-forge mamba=0.23.3
-          #rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround from mamba-org/mamba#488
-          #mamba install -c bioconda snakemake=6.10.0
-          conda install -c bioconda snakemake=6.10.0
+          conda install -c conda-forge mamba=0.23.3
+          rm -f /usr/share/miniconda/pkgs/cache/*.json # workaround from mamba-org/mamba#488
+          mamba install -c bioconda snakemake=6.10.0
 
       - name: Install snakemake (macOS)
         if: runner.os == 'macOS'
         run: |
-          #conda install -c conda-forge mamba=0.23.3
-          #mamba install -c bioconda snakemake=6.10.0
-          conda install -c bioconda snakemake=6.10.0
-      
+          conda install -c conda-forge mamba=0.23.3
+          mamba install -c bioconda snakemake=6.10.0
+          
       - name: Run workflow
         env:
           BIOCONDUCTOR_USE_CONTAINER_REPOSITORY: true