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Infer run number & centralised reg parse (#4285)
* Fix mixed use of alias in cylc cycle-point help * Centralise both parsing of REG and inference of run number * Type annotations & homogenise "[OPTIONS] ARGS" in script docstrings * Fix functional tests * Update changelog * Remove unecessary require_flow_file arg from workflow_files.parse_reg() * Create get_cylc_run_dir() function * Allow parse_reg to use relative paths when src=True * Centralise workflow_files messages; clarify reg clash msg * Revert "Fix functional tests" This reverts commit 70673f1. * Fix use of get_template_vars() post-deconfliction * Make add_cylc_rose_options() a method of CylcOptionParser * Remove now-defunct functional test The behaviour has changed and is covered by unit tests * Improve coverage exclusion * Update changelog * Address code review * Clarify warning msg in response to code review * Tweak reinstall to partially use centralised reg parse
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