buildx failed with: ERROR: failed to solve: process "/bin/sh -c yum install -y wget perl bzip2 gcc ncurses-devel zlib-devel bzip2-devel xz-devel openssl-devel libcurl-devel make;" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y cmake=${CMAKE_VERSION} g++=${G_VERSION} git=${GIT_VERSION} liblzma-dev=${LIBLZMA_VERSION} libbz2-dev=${LIBBZ2_VERSION} wget=${WGET_VERSION} zlib1g-dev=${ZLIB1G_VERSION} && git clone --recursive --depth 1 --branch ${FREEBAYES_VERSION} https://github.com/ekg/freebayes.git && cd freebayes && make && make install" did not complete successfully: exit code: 100

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y curl && curl -sL \"https://cf.10xgenomics.com/releases/cell-exp/cellranger-${CELLRANGER_MAJ_VER}.tar.gz?Expires=1687836169&Policy=eyJTdGF0ZW1lbnQiOlt7IlJlc291cmNlIjoiaHR0cHM6Ly9jZi4xMHhnZW5vbWljcy5jb20vcmVsZWFzZXMvY2VsbC1leHAvY2VsbHJhbmdlci02LjEuMi50YXIuZ3oiLCJDb25kaXRpb24iOnsiRGF0ZUxlc3NUaGFuIjp7IkFXUzpFcG9jaFRpbWUiOjE2ODc4MzYxNjl9fX1dfQ__&Signature=hP3Qa5KzkyzLID5E1xHUBUBRnhW5viNgzMiYDfLUHaXAL3rwgrD5x8Ix7lbwvcUe9NLLV92be9byFrvqlL5Mo4T7okxHNs41TsaPnWFzksmuBD4PlmBKexPmG~9x~9l3o1~JtOuZFj7ArbVOM1Mjr80wgoppa9qDeoMAgqhxrCQ9e2mRVaTEjVb03Op7uuCgUWHNgcfmPrfpQRyNUmLNHhsw0Nc2Vl6-c9UrYgVF~Q-bKUrJN7mKYsKQi8GN2NQCiqtjLxqd0KDZMGmdYSzthSX3Hmbg4xEwakCECg6qqDeQBfsHVqwDx7McPP755HNKJ9fRwWJsGsCHgcwADRY9Ng__&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA\" | tar -xz && apt remove -y curl" did not complete successfully: exit code: 2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get update && apt-get install -y --no-install-recommends apt-utils" did not complete successfully: exit code: 100

buildx failed with: ERROR: failed to solve: process "/bin/sh -c swupd os-install --no-progress --no-boot-update --no-scripts --version ${CLEAR_VERSION} --path /install_root --statedir /swupd-state --bundles os-core-update,which" did not complete successfully: exit code: 14

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update --fix-missing && apt install -y wget bzip2 ca-certificates curl tar libxt-dev r-base parallel samtools build-essential zlib1g-dev libncurses5-dev libbz2-dev liblzma-dev libcurl4-openssl-dev libcrypto++-dev libcurl4-openssl-dev libssl-dev && wget -q http://compbio.med.harvard.edu/BIC-seq/NBICseq-norm_v${NORM_VERSION}.tar.gz && wget -q http://compbio.med.harvard.edu/BIC-seq/NBICseq-seg_v${SEG_VERSION}.tar.gz && tar -xzf NBICseq-norm_v${NORM_VERSION}.tar.gz && rm NBICseq-norm_v${NORM_VERSION}.tar.gz && cd NBICseq-norm_v${NORM_VERSION} && make clean && make && cd / && tar -xzf NBICseq-seg_v${SEG_VERSION}.tar.gz && rm NBICseq-seg_v${SEG_VERSION}.tar.gz && cd NBICseq-seg_v${SEG_VERSION} && make clean && make && cd / && wget -q http://compbio.med.harvard.edu/BIC-seq/BICseq2/samtools-0.1.7a_getUnique-0.1.3.tar.gz && tar -xzf samtools-0.1.7a_getUnique-0.1.3.tar.gz && rm samtools-0.1.7a_getUnique-0.1.3.tar.gz && chown -R root:root NBICseq-norm_v${NORM_VERSION} && chown -R root:root NBICseq-seg_v${SEG_VERSION} && chown -R root:root samtools-0.1.7a_getUnique-0.1.3 && chmod -R 755 NBICseq-norm_v${NORM_VERSION} && chmod -R 755 NBICseq-seg_v${SEG_VERSION} && chmod -R 755 samtools-0.1.7a_getUnique-0.1.3 && apt remove -y wget" did not complete successfully: exit code: 2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update --fix-missing && apt install -y software-properties-common build-essential curl gfortran libcurl4-openssl-dev libxml2-dev zlib1g-dev libxmlsec1 libblas-dev liblapack-dev libssl-dev && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && apt update && apt install -y r-base-core=${R_VERSION} && Rscript -e 'if (!requireNamespace(\"BiocManager\", quietly = TRUE)) install.packages(\"BiocManager\"); BiocManager::install(\"CODEX\", version = \"3.8\"); BiocManager::install(\"WES.1KG.WUGSC\", version = \"3.8\"); install.packages(\"devtools\"); devtools::install_github(\"yuchaojiang/CODEX2/package\"); source(\"https://bioconductor.org/biocLite.R\"); biocLite(\"BSgenome.Hsapiens.UCSC.hg38\")'" did not complete successfully: exit code: 2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt upgrade -y && apt install -y wget python3-dev python3-pip && python3 -m pip install 'pysam>=${PYSAM_VERSION}' && wget https://raw.githubusercontent.com/kids-first/kf-somatic-workflow/9868648597ff4d878708689080c4ca0b0b4615c0/scripts/hotspot.py && chmod +x hotspot.py && apt remove -y wget" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get -y install oracle-java8-installer && apt-get clean" did not complete successfully: exit code: 100

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y wget build-essential git samtools bedtools python-pip zlib1g-dev && pip install sklearn scipy numpy psutil argparse pandas seaborn datetime && git clone https://github.com/WGLab/LinkedSV.git && cd LinkedSV/ && sh build.sh && cd / && apt remove -y wget git python-pip" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential software-properties-common libcurl4-openssl-dev libssl-dev libxml2-dev && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && apt update && apt install -y r-base" did not complete successfully: exit code: 2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c R -e \"versions::install.versions(c('optparse','data.table'),c('${OPTPARSE_VERSION}','${DATATABLE_VERSION}'))\"" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c git clone --branch $SAMTOOLS_VERSION --recurse-submodules git://github.com/samtools/htslib.git && git clone --branch $SAMTOOLS_VERSION git://github.com/samtools/bcftools.git" did not complete successfully: exit code: 128

buildx failed with: ERROR: failed to solve: process "/bin/sh -c R -e \"versions::install.versions(c('optparse','data.table'),c('${OPTPARSE_VERSION}','${DATATABLE_VERSION}'))\"" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c R -e \"BiocManager::install('scDblFinder')\"" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential apt-utils autoconf git cmake python curl libz-dev libtbb-dev libncurses5-dev bsdmainutils gawk libbz2-dev liblzma-dev libcurl4-openssl-dev libssl-dev && curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py && python get-pip.py && rm get-pip.py && pip install numpy pysam scipy && git clone --recursive https://github.com/hall-lab/speedseq && cd /speedseq && curl -OL https://root.cern.ch/download/root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && tar -xzf root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && rm root_v6.14.02.Linux-ubuntu16-x86_64-gcc5.4.tar.gz && rm -rf src/samtools-1.3.1 && curl -OL https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2 && tar -xjf samtools-1.8.tar.bz2 && rm samtools-1.8.tar.bz2 && mv samtools-1.8 src/ && cat Makefile | sed 's/1.3.1/1.8/' > temp && mv temp Makefile && cat src/CNVnator/Makefile | sed 's/MathCore/MathCore -lcrypto -llzma -lbz2 -lcurl/' > temp && mv temp src/CNVnator/Makefile" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y python python-pip libz-dev bedtools tabix && pip install cython numpy pandas pybedtools pysam scikit-learn==0.19.1 scipy && pip install sv2 && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c git clone https://github.com/atks/vt.git && cd vt && make -j8 && make test" did not complete successfully: exit code: 2

buildx failed with: ERROR: failed to solve: process "/bin/sh -c pip install pysam numpy==1.16.5" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install -y build-essential curl python python-pip libcurl4-openssl-dev libz-dev liblzma-dev libssl-dev libbz2-dev && pip install pysam numpy==1.16.5 && curl -OL https://github.com/hall-lab/svtyper/archive/v${SVTYPER_VERSION}.tar.gz && tar -xzf v${SVTYPER_VERSION}.tar.gz && rm v${SVTYPER_VERSION}.tar.gz && pip install svtyper-${SVTYPER_VERSION}/ && apt remove -y curl && apt clean -y" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c tar -xzf ${CAVEMAN_VERSION}.tar.gz && rm ${CAVEMAN_VERSION}.tar.gz && cd CaVEMan-${CAVEMAN_VERSION} && make && cd / && wget -q https://github.com/genome/pindel/archive/${PINDEL_COMMIT}.tar.gz && tar -xzf ${PINDEL_COMMIT}.tar.gz && rm ${PINDEL_COMMIT}.tar.gz && mv pindel-${PINDEL_COMMIT} pindel-${PINDEL_VERSION} && cd pindel-${PINDEL_VERSION} && ./INSTALL $LD_LIBRARY_PATH && cpanm --notest Bio::DB::HTS && cd / && wget -q https://github.com/cancerit/cgpVcf/archive/v${CGP_VCF_VERSION}.tar.gz && tar -xzf v${CGP_VCF_VERSION}.tar.gz && rm v${CGP_VCF_VERSION}.tar.gz && cd cgpVcf-${CGP_VCF_VERSION} && ./setup.sh /usr/local/bin/cgpVcf-${CGP_VCF_VERSION} && cd /" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update -y && apt upgrade -y && apt install -y build-essential git cpanminus curl wget unzip automake samtools tabix libmysqlclient-dev libncurses5-dev zlib1g-dev libgsl0-dev libexpat1-dev libgd-dev&& cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version && git clone https://github.com/Ensembl/ensembl-vep.git && cd ensembl-vep && git checkout release/${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd /ensembl-vep/cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && wget https://github.com/mskcc/vcf2maf/archive/v${MAF_VERSION}.tar.gz && tar -xzf v${MAF_VERSION}.tar.gz && rm v${MAF_VERSION}.tar.gz && mv vcf2maf-${MAF_VERSION} vcf2maf && apt remove curl wget git -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update -y && apt upgrade -y && apt install -y build-essential git cpanminus curl wget unzip automake samtools tabix libmysqlclient-dev libncurses5-dev zlib1g-dev libgsl0-dev libexpat1-dev libgd-dev pigz&& cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version && wget -q https://github.com/Ensembl/ensembl-vep/archive/release/${VEP_VERSION}.tar.gz && tar -xzf ${VEP_VERSION}.tar.gz && rm ${VEP_VERSION}.tar.gz && cd ensembl-vep-release-${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && apt remove curl wget -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update -y && apt upgrade -y && apt install -y build-essential git cpanminus curl wget unzip automake samtools tabix libmysqlclient-dev libncurses5-dev zlib1g-dev libgsl0-dev libexpat1-dev libgd-dev&& cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple File::Copy::Recursive Perl::OSType Module::Metadata version TAP::Harness CGI Encode CPAN::Meta JSON DBD::SQLite Set::IntervalTree Archive::Tar Time::HiRes Module::Build Bio::Root::Version && git clone https://github.com/Ensembl/ensembl-vep.git && cd ensembl-vep && git checkout release/${VEP_VERSION} && perl INSTALL.pl --NO_TEST --NO_UPDATE --AUTO ap --PLUGINS LoF --CACHEDIR cache && cd /ensembl-vep/cache && wget -q https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl && cd / && wget https://github.com/mskcc/vcf2maf/archive/v${MAF_VERSION}.tar.gz && tar -xzf v${MAF_VERSION}.tar.gz && rm v${MAF_VERSION}.tar.gz && mv vcf2maf-${MAF_VERSION} vcf2maf && apt remove curl wget git -y && apt autoclean -y && apt autoremove -y" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt-get update -y && R -e \"BiocManager::install(version = \\\"${BIOC_VERSION}\\\")\" && R -e \"BiocManager::install('GenomicRanges', version = \\\"${BIOC_VERSION}\\\")\" && R -e \"remotes::install_version('optparse', version = \\\"${OPTPARSE_VERSION}\\\", dependencies=TRUE, repos='http://cran.us.r-project.org')\" && R -e \"remotes::install_github('d3b-center/d3b-analysis-toolkit', ref = 'main', subdir = 'tmb')\" && apt-get clean -y && rm -rf /var/lib/apt/lists/*" did not complete successfully: exit code: 1

buildx failed with: ERROR: failed to solve: process "/bin/sh -c apt update && apt install gfortran gfortran-10 libgfortran-10-dev libgfortran5 && apt install liblapack-dev libblas-dev libblas3 liblapack3 && pypy -m pip install numpy cython && git clone https://github.com/xianyi/OpenBLAS && cd OpenBLAS && make FC=gfortran && make PREFIX=/opt/OpenBLAS install && cd .. && pypy -m pip install scipy pandas pyreadr" did not complete successfully: exit code: 1