🔨 add droplet utils (#253)

d3b-center · Aug 26, 2024 · da6f60a · da6f60a
1 parent 28195ef
commit da6f60a
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/hbc_scrna_qc/scrnaseq/Dockerfile b/hbc_scrna_qc/scrnaseq/Dockerfile
@@ -13,4 +13,5 @@ RUN apt update -y && apt install -y libbz2-dev libglpk40 libhdf5-dev patch
 RUN  mkdir ~/.R && echo MAKEFLAGS = -j8 > ~/.R/Makevars && R -e "BiocManager::install(c('AnnotationHub', 'ensembldb', 'multtest', 'glmGamPoi'))"
 RUN R -e "install.packages(c('optparse', 'cowplot', 'fitdistrplus', 'future', 'future.apply', 'ggrepel', 'ggridges', 'ica', 'igraph', 'irlba', 'leiden', 'lmtest', 'matrixStats', 'patchwork', 'pbapply', 'plotly', 'png', 'progressr', 'RANN', 'RcppAnnoy', 'reticulate', 'ROCR', 'Rtsne', 'scattermore', 'sctransform', 'spatstat.explore', 'spatstat.geom', 'uwot', 'RcppEigen', 'RcppProgress', 'sp', 'metap', 'hdf5r', 'patch'), type='source', Ncpus=8)"
 RUN R -e "install.packages(c('${SEURATOBJECT_URL}','${SEURAT_URL}'), repos=NULL, type='source', Ncpus=8)"
+RUN R -e "BiocManager::install('DropletUtils')"
 COPY Dockerfile .