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Flywheel gear to extract tiles of a whole slide image (HistomicsTK/large_image)

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d3b-center/fw-histomicsTK-tile-wsi

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HistomicsTK Flywheel gear for generating tiles of a whole slide image

This gear will generate tiles for a single WSI using HistomicsTK tools. Low-contrast images will not be saved (in an effort to ignore background regions).

HistomicsTK source documentation

Dependencies:

  • HistomicsTK (gear uses the latest Docker container at dsarchive/histomicstk)

Required inputs:

  • Input WSI

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Flywheel gear to extract tiles of a whole slide image (HistomicsTK/large_image)

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