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Update TMB calculation (5/11) #110

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@komalsrathi komalsrathi commented Jun 21, 2024

Created off of update-subtyping
Updating TMB calculation. Sample sizes incremented by 2.

# old sample size
cat results/wgs_paired/snv-mutation-tmb-all.tsv | wc -l
      72
cat results/wgs_paired/snv-mutation-tmb-coding.tsv | wc -l 
      72
cat results/wgs_tumor_only/snv-mutation-tmb-all.tsv | wc -l
      89
cat results/wgs_tumor_only/snv-mutation-tmb-coding.tsv | wc -l
      89

# new sample size
cat results/wgs_paired/snv-mutation-tmb-all.tsv | wc -l   
      74
cat results/wgs_paired/snv-mutation-tmb-coding.tsv | wc -l 
      74
cat results/wgs_tumor_only/snv-mutation-tmb-all.tsv | wc -l   
      91
cat results/wgs_tumor_only/snv-mutation-tmb-coding.tsv | wc -l
      91

@komalsrathi komalsrathi self-assigned this Jun 21, 2024
@komalsrathi komalsrathi changed the base branch from master to update-subtyping July 15, 2024 17:41
@komalsrathi komalsrathi changed the title Update TMB calculation Update TMB calculation (5/11) Jul 15, 2024
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