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3.1 #458

Merged
merged 58 commits into from
Dec 1, 2022
Merged

3.1 #458

merged 58 commits into from
Dec 1, 2022

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jiajic
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@jiajic jiajic commented Dec 1, 2022

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jiajic and others added 30 commits November 21, 2022 13:17
Add abbreviated show functionality for 'denseMatrix' based exprObj
** WORK IN PROGRESS **
- split cosmx function into each different workflow for readability
- added splitting of subcellular features into features vs negprobes feat_types
- added documentation for unicode printing and color detection
- ran document
- added protein mean intensity expr matrix generation from metadata
- fix subcellular image loading
- add CellComp to point metadata
remove set default warnings.
spat_unit and feat_type should already be set during S4 creation
add provenance access and set generics
- added spatUnit, spatUnit<-, featType, featType<-
check_prov_match now takes a ... instead of a list
new access generics and update join
jiajic and others added 28 commits November 26, 2022 17:56
Update spatial_in_situ_visuals.R
bypass cowplot for length = 1 and coord_fix_ratio edits
hexbin change to use binwidth with default of 1/10 of minor axis
Added a function to set a cow_n_col value dependent on how many plots there are to combine.
Increment version number
fix typo
include information from RTD website
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2 participants