Code

3.1#458

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jiajic merged 58 commits intosuitedrieslab/Giotto:suitefrom suite_devdrieslab/Giotto:suite_devCopy head branch name to clipboardDec 1, 2022

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Commits

Commits on Nov 21, 2022

• update show function exprObj

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• fix join expression bug

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• Merge remote-tracking branch 'upstream/suite' into suite_dev

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• Merge pull request #442 from RubD/suite_dev

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• Merge branch 'suite_dev' of https://github.com/drieslab/Giotto into patch_conv_fxns

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Commits on Nov 22, 2022

• Update giotto_structures.R

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• Merge pull request #444 from jiajic/patch_conv_fxns

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• patch1 - cosmx convenience function

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• update cosmx

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• Update giotto.R

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Commits on Nov 23, 2022

• test subcellular

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• accessors update

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• test

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• Update giotto.R

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• prov generic

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• Add generics and document

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• update provenance matching

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• update

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• join bugfix

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• update subc seq

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Commits on Nov 24, 2022

• update functions for subc sequencing technologies

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• update documentation

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• Merge pull request #445 from RubD/suite_dev

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Commits on Nov 25, 2022

• patch join function

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• Merge branch 'suite_dev' of https://github.com/drieslab/Giotto into patch_conv_fxns

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• fix conflicts and document

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• Merge pull request #446 from jiajic/patch_conv_fxns

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• set coord_fix_ratio to 1

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Commits on Nov 26, 2022

• update subcellular fx for large images

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• tag cells and feats

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• allow set by reference for DT classes

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Commits on Nov 27, 2022

• fix initialize method

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• Merge pull request #449 from jiajic/S4_DTref

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• Merge remote-tracking branch 'upstream/suite_dev' into suite_dev

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• Merge pull request #450 from RubD/suite_dev

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Commits on Nov 28, 2022

• Update spatial_in_situ_visuals.R

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• Update spatial_in_situ_visuals.R

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• Update spatial_in_situ_visuals.R

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• fix param

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• ..density.. warning fix

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• Make bins setup more flexible

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• Update spatial_in_situ_visuals.R

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• Merge pull request #452 from jiajic/density_visuals_patch

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Commits on Nov 29, 2022

• Merge branch 'suite' of https://github.com/jiajic/Giotto into suite_dev

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• document

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• update wrap_msg to use sep param

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Commits on Nov 30, 2022

• Update grid plotting behavior

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• Merge branch 'suite' of https://github.com/drieslab/Giotto into suite_dev

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Commits on Dec 1, 2022

• Update DESCRIPTION

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• Create NEWS.md

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• Update NEWS.md

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• Update NEWS.md

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• Update readme and fix links for suite

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• fix typo in readme

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• Update NEWS.md

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• Update NEWS.md

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• Update NEWS.md

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• document

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