feature 1695 ensemble single file (ensemble_stat) #2007
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…d when building MET
…ET_ENS_MEMBER_ID into strings that are read from the config
…nsemble found into process_config to perform error checking with ens_member_ids and create list of VarInfo pointers based on number of files and member IDs to be consistent between cases that read multiple files and a single file
…r, cat_ta, and nc_info for each field to process. Loop over these structs and pass them to functions to process ensembles instead of passing indices. Added logic to read ens_member_ids and substitute values into field info to read multiple fields from a single file
…oncatString (it is always dereferened) to make it easier to substitute values into strings
…DockerHub to be used for testing METplus use cases
…Hub Actions logs for tasks that produce a lot of output
…and push to dtcenter/met repository
…cate logic to get correct VarInfo objects, store raw name/level 'magic string' before env var substitution, store reference to file list into EnsVarInfo to get file to use easily
…s will not be parsed properly if it is set by the user
…With GRIB and NetCDF input data, with and without using a control member
… to EnsembleStat
…is comparing by outputting the fraction used in the comparison
Closed
21 tasks
…nsProd. Function to get raw magic string (before env var is substituted) tries to read the level value which is not set when using Python Embedding
21 tasks
… Embedding is used
JohnHalleyGotway
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Jan 14, 2022
There was a problem hiding this comment.
I approve of these changes.
I did run into one issue, but decided to just make the change directly in this feature branch. The EnsembleStatConfig_single_file_nc and EnsembleStatConfig_single_file_grib config files test this new functionality. They include settings in the ens, fcst, and obs dictionaries. The NetCDF output files are generated from the ens dictionary, but there is no fcst/obs output written since all output_flag values are set to NONE. I plan to change "output_flag.ect = STAT;" which will exercise more of this logic.
On 1/13/22, I ran a full regression test in kiowa:/d1/projects/MET/MET_pull_requests/met-10.1.0/met-10.1.0_beta5/feature_1695_ensemble_stat. I see the following differences:
New output files added for this PR:
ERROR: folder MET-develop/test_output missing 4 files
ensemble_stat/ensemble_stat_SINGLE_FILE_GRIB_NO_CTRL_20160608_060000V_ens.nc
ensemble_stat/ensemble_stat_SINGLE_FILE_GRIB_WITH_CTRL_20160608_060000V_ens.nc
ensemble_stat/ensemble_stat_SINGLE_FILE_NC_NO_CTRL_19700101_000000V_ens.nc
ensemble_stat/ensemble_stat_SINGLE_FILE_NC_WITH_CTRL_19700101_000000V_ens.nc
All other diffs flagged are the result of recent PR's merged into develop since the last time develop-ref was updated.
- New output for openmp tests and tc_gen. As well as changes to an existing grid_stat configuration.
- Fix to tc_gen bug in writing PRC and PJC line types. Also modifies shapefile gen_vx_mask output store shapefile locations as doubles instead of ints.
- Fix to ioda2nc issue.
I reviewed the code changes, documentation, and test updates themselves. They all look great and match what we discussed. I'll make the config change I mentioned, approve, and merge these changes into develop.
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#2016) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu> Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: Seth Linden <linden@ucar.edu> Co-authored-by: hsoh-u <hsoh@ucar.edu> Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@seneca.rap.ucar.edu> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> Co-authored-by: mo-mglover <78152252+mo-mglover@users.noreply.github.com>
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* Per #1906, modify code to pass entire path to make_temp_file_name instead of only the filename so that the function can tell whether or not the file exists. (#1952) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * Feature 1761 percent thresh (#1956) * Per issue #1761 in set_perc() adding code to get FBIAS numeric value, like 1.0 or 0.9, etc. SL * Per issue #1761: in set_perc(), modified actual percentile calculation at end to use the extracted FBIAS numeric value (float). SL * Per issue #1761: modified the check on the perc_thresh_freq_bias, just has to be > 0 now. SL * Per issue #1761: cleaned up code in set_perc(). SL * Per #1761, updates to Simple_Node::set_perc() to handle variable frequency bias amounts. Changes include: - Reverting the formatting of this back to how it originally was in the develop branch. In general, just match the formatting of the existing file, so as the minimize the number of difference lines. - Add logic to adjust the percentile to be found based on the requested FBIAS value. Multiplying or dividing the percentile by the FBIAS value depends on the inequality type and whether we're bias adjusting the forecast or observation data. - Adjust the log messages slightly. Please be aware that I'm not totally confident in these changes. They warrant much more testing. This logic is very, very confusing. * Per #1761, call compute_percentile() when double-checking the percentile values. * Per #1761, remove unused variable. * Per #1761, add warning for percentiles > 100. * Per #1761. In set_perc(), after testing cleaned up code. SL * Per issue #1761: adding new config file for testing dynamic FBIAS values. SL * Per issue #1761: added new unit test for dynamic FBIAS values when running grid_stat. SL * Per issue #1761, modified FBIAS section to indicated that the user can use dynamic values that are not 1.0. SL * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Per issue #1761, set nc_pairs_flag = FALSE. SL Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1905 ens_ctrl (#1955) Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> * Hotfix after merging changing for #1761. Updating the list of expected output files. * Per #1905, committing a hotfix directly to the develop branch. Reverting the logic for computing the ensemble range back to what it was previously. The new version produced very slight differences in the 6-th or 7-th decimal place when compared to previous results. There's not good reason for these changes which were caused by the order of operations in casting from doubles to floats. Reverting back to the old logic prevents diffs for anyone else downstream and is the prudent choice. * Feature 1957 ascii2nc_python (#1958) * Feature 1949 cf netcdf documentaton (#1951) * #1949 Added CF compliant NetCDF into data IO * #1949 Added commas * #1948 Some corrections for typo and added the links for CF attributes * #1948 Added Performance with NetCDF input data * #1949 Corrected tyoe and applied Juloie's suggestions Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> * Feature 1968 ens_ctrl (#1969) * Feature 1809 gen prob (#1967) * Feature 1970 v10.1.0-beta4 (#1973) * Fix tiny typo in plot_data_plane usage statement. * Hotfix for the develop branch to get met-10.1.0-beta4 compiling on WCOSS. The intel compiler does not allow adjacent >> characters when defining maps. * Updating the beta4 release date from 11/16 to 11/17 since the beta4 release needs to be recreated. * Update the MET PR template to list expected changes up front. * Bugfix 1976 develop cdist (#1979) * #1936 Excludes precip3hr, precip6hr, precip12hr, and precip10min from required variables for MESONET * Per #1985, correcting typo found while creating V10.0.1 in the develop branch as well. * Per #1985, VERY minor change to fix alignment of titles in Point-Stat... updating the develop branch. * #1936 Added an unit test for newer MESONET file * Feature 1989 sort (#1990) * Feature 1991 VCNT (#1992) * Feature 1993 grid_mask (#1994) * #1844 Added vx_pointdata_python * #1844 Added vx_pointdata_python to PYTHON_LIBS & make file for vx_pointdata_python * #1844 Added vx_pointdata_python to SUBDIRS * #1844 Initial release * #1844 Added met_point_data.cc & met_point_data.h * #1844 NcHeaderData is renamed to MetPointHeader and moved to met_point_dataq.h * #1844 NcPointObsData is derived from MetPointObsData. Many methods are moved to the base class MetPointObsData * #1844 Moved varianbles and methods to the base class MetPointData * #1844 override the obs_data pointer to the derived class * #1844 Added pyobject_as_bool & pyobject_as_string_array * #1844 Cleanup include statements and addpointdata_python.h if python is enabled * #18443 Support python embedding * #1844 Initial release * #1844 Make buf_size const * Add GitHub Actions workflow to trigger METplus testing workflow (#2002) * changed names of inputs to send to METplus to match changes to METplus repo * #1965 Excludes the duplicated variable names from multiple input files * #1965 Processed with the raw variable names and update them when the output is saved. * #1965 Added unit test ioda2nc_same_input * #1965 Processed with the raw variable names and update them when the output is saved. * #1965 Added unit test ioda2nc_same_input * #1965 initialize var_idx * Update the development environment for seneca to add /usr/local/nco/bin and /usr/local/netcdf/bin to the path. Also define MET_TEST_RSCRIPT to point to a new enough version of RSCRIPT that has the ncdf4 package 1.17 or later. * send email address of user who triggered event to METplus workflow as input * Fixup the Rscript diffing logic to support running the nightly build on seneca. The problem here is that the ncdiff -x -v command line options that worked in version 4.7.0 NO LONGER work in 4.9.2. Added a check to skip over the time_bounds variable when processing the ncdiff output. * No real changes here. Just formatting * Feature 1974 message_type_group_map (#1999) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1996 uninitialized variables (#2004) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1695 ensemble single file (gen_ens_prod) (#2001) Co-authored-by: johnhg <johnhg@ucar.edu> * Feature 1965 NB faile with time summary by ioda2nc (#2008) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> * Feature 1810 shapes (#2005) * #1844 Added log message for use_var_id * #1844 Get use_var_id for python embedding * #1844 Initial release * #1844 Added met_point_obs.py and read_met_point_obs.py * #1844 Added 4 unit test for python embedding of MET point data * More changes to test_util.R to account for differences between 4.7.0 and 4.9.2 of ncdiff. The earlier version reported 0 diffs for the time_bounds, lat, lon, latitude, and longitude variables while the newer version reports their raw values. Simply ignore these variables for now. This isn't a great solution but when we reimplement this testing logic in python, we can address this issue then. * #1844 Added python embedding for point observation data * Feature 1926 gridstat openmp (#1977) Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * feature 1695 ensemble single file (ensemble_stat) (#2007) Co-authored-by: johnhg <johnhg@ucar.edu> * Committing directly to the develop branch. Removing many, many instances of MET_BUILD_BASE and a couple instances of MET_BASE from the examples listed in Appendix A. The inconsistent use of these variables will only cause confusion. Removing them will help avoid that confusion. Big picture... MET_BASE defines the installed 'share/met' directory. It can be used to reference the location of map or polyline files. MET_BUILD_BASE is only used in the context of the test scripts. There, it's defined as the top-level source code directory in which the code was compiled. Its used to reference the location of sample data files or Rscript included in the tarball. I left a couple references to these variables in Appendix A where thier use is not confusing. But I removed all instances which are used to the define the location of the 'bin' directory. Instead, let's just assume the MET binaries are already in their path... or the user knows where to find them. * feature 2011 v10.1.0-beta5 (#2014) * feature 1695 fix issues with ensemble changes (#2012) Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu> * Hotfix for #1695 committed directly to the develop branch. The new Ensemble-Stat config files added for this issue don't define a random number generator seed. This results in different output for each run and prevents the regression test from producing repeatable results. Defining the seed here to fix that. * Adding George to email list for the nightly build. * Fix the links for the met-10.1.0-beta5 release notes. * #1844 Make met_point_obs as abstract class * #1844 correctedb for loop end condition on processing obs bdata * Feature 1546 unit_tests (#2021) * #2020 Added SonarQube related varibales * #2020 Initial release * #2015 Avoid the repeasted debug message if derived varibales are disabled * #1996 Initialize right and left * #1966 Call clear() instead of reset memory for Header variable * #1966 Make sure the levels from variable does not exceed the maxLevel * #1966 Removed unreachable codes * #1966 Do not write into NetcDF if empty data * #2015 Corrected "retained or derived" count * Feature 1546 CI testing (#2029) Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * fixed broken workflow by setting environment variable expected for docker build script * add missing docker tag from push command * added correct docker tag value * fixed incorrect truth data version for updating -ref reference data * Updating develop with changes to the unit tests names. Renaming unit_test.yml to a more generic testing.yml name since it compiles AND/OR runs unit tests. Also make the job names more concise so its easier to see what's running in the action summary window on GitHub. * fixed directory to copy truth data into -- copy command was copying the content of the directory, not including the directory itself * Per #1907, added warning about switch from Ensemble-Stat to Gen-Ens-Prod (#2032) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * 2028 Check null for header data * Removed un-reachable code * #2028 Check if the pointer (d) is null * #2015 Changed warning to debug message * #2028 Passing two dimensionl cur and dim array * #2028 Set obs_data * Feature 2003 briercl (#2034) Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> Co-authored-by: Seth Linden <linden@ucar.edu> Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> Co-authored-by: hsoh-u <hsoh@ucar.edu> Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@seneca.rap.ucar.edu> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> Co-authored-by: mo-mglover <78152252+mo-mglover@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu> Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
JohnHalleyGotway
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* Per #1906, modify code to pass entire path to make_temp_file_name instead of only the filename so that the function can tell whether or not the file exists. (#1952) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * Feature 1761 percent thresh (#1956) * Per issue #1761 in set_perc() adding code to get FBIAS numeric value, like 1.0 or 0.9, etc. SL * Per issue #1761: in set_perc(), modified actual percentile calculation at end to use the extracted FBIAS numeric value (float). SL * Per issue #1761: modified the check on the perc_thresh_freq_bias, just has to be > 0 now. SL * Per issue #1761: cleaned up code in set_perc(). SL * Per #1761, updates to Simple_Node::set_perc() to handle variable frequency bias amounts. Changes include: - Reverting the formatting of this back to how it originally was in the develop branch. In general, just match the formatting of the existing file, so as the minimize the number of difference lines. - Add logic to adjust the percentile to be found based on the requested FBIAS value. Multiplying or dividing the percentile by the FBIAS value depends on the inequality type and whether we're bias adjusting the forecast or observation data. - Adjust the log messages slightly. Please be aware that I'm not totally confident in these changes. They warrant much more testing. This logic is very, very confusing. * Per #1761, call compute_percentile() when double-checking the percentile values. * Per #1761, remove unused variable. * Per #1761, add warning for percentiles > 100. * Per #1761. In set_perc(), after testing cleaned up code. SL * Per issue #1761: adding new config file for testing dynamic FBIAS values. SL * Per issue #1761: added new unit test for dynamic FBIAS values when running grid_stat. SL * Per issue #1761, modified FBIAS section to indicated that the user can use dynamic values that are not 1.0. SL * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Per issue #1761, set nc_pairs_flag = FALSE. SL Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1905 ens_ctrl (#1955) Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> * Hotfix after merging changing for #1761. Updating the list of expected output files. * Per #1905, committing a hotfix directly to the develop branch. Reverting the logic for computing the ensemble range back to what it was previously. The new version produced very slight differences in the 6-th or 7-th decimal place when compared to previous results. There's not good reason for these changes which were caused by the order of operations in casting from doubles to floats. Reverting back to the old logic prevents diffs for anyone else downstream and is the prudent choice. * Feature 1957 ascii2nc_python (#1958) * Feature 1949 cf netcdf documentaton (#1951) * #1949 Added CF compliant NetCDF into data IO * #1949 Added commas * #1948 Some corrections for typo and added the links for CF attributes * #1948 Added Performance with NetCDF input data * #1949 Corrected tyoe and applied Juloie's suggestions Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> * Feature 1968 ens_ctrl (#1969) * Feature 1809 gen prob (#1967) * Feature 1970 v10.1.0-beta4 (#1973) * Fix tiny typo in plot_data_plane usage statement. * Hotfix for the develop branch to get met-10.1.0-beta4 compiling on WCOSS. The intel compiler does not allow adjacent >> characters when defining maps. * Updating the beta4 release date from 11/16 to 11/17 since the beta4 release needs to be recreated. * Update the MET PR template to list expected changes up front. * Bugfix 1976 develop cdist (#1979) * #1936 Excludes precip3hr, precip6hr, precip12hr, and precip10min from required variables for MESONET * Per #1985, correcting typo found while creating V10.0.1 in the develop branch as well. * Per #1985, VERY minor change to fix alignment of titles in Point-Stat... updating the develop branch. * #1936 Added an unit test for newer MESONET file * Feature 1989 sort (#1990) * Feature 1991 VCNT (#1992) * Feature 1993 grid_mask (#1994) * #1844 Added vx_pointdata_python * #1844 Added vx_pointdata_python to PYTHON_LIBS & make file for vx_pointdata_python * #1844 Added vx_pointdata_python to SUBDIRS * #1844 Initial release * #1844 Added met_point_data.cc & met_point_data.h * #1844 NcHeaderData is renamed to MetPointHeader and moved to met_point_dataq.h * #1844 NcPointObsData is derived from MetPointObsData. Many methods are moved to the base class MetPointObsData * #1844 Moved varianbles and methods to the base class MetPointData * #1844 override the obs_data pointer to the derived class * #1844 Added pyobject_as_bool & pyobject_as_string_array * #1844 Cleanup include statements and addpointdata_python.h if python is enabled * #18443 Support python embedding * #1844 Initial release * #1844 Make buf_size const * Add GitHub Actions workflow to trigger METplus testing workflow (#2002) * changed names of inputs to send to METplus to match changes to METplus repo * #1965 Excludes the duplicated variable names from multiple input files * #1965 Processed with the raw variable names and update them when the output is saved. * #1965 Added unit test ioda2nc_same_input * #1965 Processed with the raw variable names and update them when the output is saved. * #1965 Added unit test ioda2nc_same_input * #1965 initialize var_idx * Update the development environment for seneca to add /usr/local/nco/bin and /usr/local/netcdf/bin to the path. Also define MET_TEST_RSCRIPT to point to a new enough version of RSCRIPT that has the ncdf4 package 1.17 or later. * send email address of user who triggered event to METplus workflow as input * Fixup the Rscript diffing logic to support running the nightly build on seneca. The problem here is that the ncdiff -x -v command line options that worked in version 4.7.0 NO LONGER work in 4.9.2. Added a check to skip over the time_bounds variable when processing the ncdiff output. * No real changes here. Just formatting * Feature 1974 message_type_group_map (#1999) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1996 uninitialized variables (#2004) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * Feature 1695 ensemble single file (gen_ens_prod) (#2001) Co-authored-by: johnhg <johnhg@ucar.edu> * Feature 1965 NB faile with time summary by ioda2nc (#2008) Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> * Feature 1810 shapes (#2005) * #1844 Added log message for use_var_id * #1844 Get use_var_id for python embedding * #1844 Initial release * #1844 Added met_point_obs.py and read_met_point_obs.py * #1844 Added 4 unit test for python embedding of MET point data * More changes to test_util.R to account for differences between 4.7.0 and 4.9.2 of ncdiff. The earlier version reported 0 diffs for the time_bounds, lat, lon, latitude, and longitude variables while the newer version reports their raw values. Simply ignore these variables for now. This isn't a great solution but when we reimplement this testing logic in python, we can address this issue then. * #1844 Added python embedding for point observation data * Feature 1926 gridstat openmp (#1977) Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * feature 1695 ensemble single file (ensemble_stat) (#2007) Co-authored-by: johnhg <johnhg@ucar.edu> * Committing directly to the develop branch. Removing many, many instances of MET_BUILD_BASE and a couple instances of MET_BASE from the examples listed in Appendix A. The inconsistent use of these variables will only cause confusion. Removing them will help avoid that confusion. Big picture... MET_BASE defines the installed 'share/met' directory. It can be used to reference the location of map or polyline files. MET_BUILD_BASE is only used in the context of the test scripts. There, it's defined as the top-level source code directory in which the code was compiled. Its used to reference the location of sample data files or Rscript included in the tarball. I left a couple references to these variables in Appendix A where thier use is not confusing. But I removed all instances which are used to the define the location of the 'bin' directory. Instead, let's just assume the MET binaries are already in their path... or the user knows where to find them. * feature 2011 v10.1.0-beta5 (#2014) * feature 1695 fix issues with ensemble changes (#2012) Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu> * Hotfix for #1695 committed directly to the develop branch. The new Ensemble-Stat config files added for this issue don't define a random number generator seed. This results in different output for each run and prevents the regression test from producing repeatable results. Defining the seed here to fix that. * Adding George to email list for the nightly build. * Fix the links for the met-10.1.0-beta5 release notes. * #1844 Make met_point_obs as abstract class * #1844 correctedb for loop end condition on processing obs bdata * Feature 1546 unit_tests (#2021) * #2020 Added SonarQube related varibales * #2020 Initial release * #2015 Avoid the repeasted debug message if derived varibales are disabled * #1996 Initialize right and left * #1966 Call clear() instead of reset memory for Header variable * #1966 Make sure the levels from variable does not exceed the maxLevel * #1966 Removed unreachable codes * #1966 Do not write into NetcDF if empty data * #2015 Corrected "retained or derived" count * Feature 1546 CI testing (#2029) Co-authored-by: John Halley Gotway <johnhg@ucar.edu> * fixed broken workflow by setting environment variable expected for docker build script * add missing docker tag from push command * added correct docker tag value * fixed incorrect truth data version for updating -ref reference data * Updating develop with changes to the unit tests names. Renaming unit_test.yml to a more generic testing.yml name since it compiles AND/OR runs unit tests. Also make the job names more concise so its easier to see what's running in the action summary window on GitHub. * fixed directory to copy truth data into -- copy command was copying the content of the directory, not including the directory itself * Per #1907, added warning about switch from Ensemble-Stat to Gen-Ens-Prod (#2032) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * 2028 Check null for header data * Removed un-reachable code * #2028 Check if the pointer (d) is null * #2015 Changed warning to debug message * #2028 Passing two dimensionl cur and dim array * #2028 Set obs_data * Feature 2003 briercl (#2034) * do not run testing workflow if changes are isolated to the met/docs directory * Per #2013, changed source and README. ci-run-unit (#2039) * Feature 1055 read rot latlon (#2041) * CI: output summary of differences in GHA log to easily see results without having to download the log artifact * #2027 Added a debug message * #2027 ci-run-unit Changed wind thres * #2027 ci-run-unit Increased the precision to debug message * print end of script after error summary, ci-run-unit * #2027 Increased the buffer and cheking the status of sprintf * Feature 1998 standard sections (#2038) * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 missed one * fixing section headers to be consistent with METplus #1998 try again * fixing section headers to be consistent with METplus #1998 I had it right the first time * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 fixing mistake * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section headers to be consistent with METplus #1998 * fixing section header underscore to dash #1998 * updating TOC vs ref 1998 * updating TOC vs ref 1998 completed * trying to fix link #1998 * trying to fix link adding reference back in #1998 * updating TOC again underscore vs dash #1998 * updating TOC again underscore vs dash #1998 * updating TOC vs ref 1998 try * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 take 2 * standardizing TOC sections #1998 take 3 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * re-standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 * updating questions into the TOC. test #1998 * updating questions into the TOC. #1998 * standardizing TOC sections #1998 * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * standardizing TOC sections #1998 fixing typo * cleaning up questions. removing section title from questions. * adding a period #1989. * adding the line breaks back in to match other formatting within MET #1989. * Changed some "^^^" to "----" * Changed "###" to "***" Co-authored-by: jprestop <jpresto@ucar.edu> * Update met_stats.cc #2047 Removed the debug message * Update met_stats.cc Removing variable that was set but never used because SonarQube might complain about that, like Fortify does. * Feature 2040 parse timing (#2048) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> * CI: Add logic to auto update input data (#2046) * Bugfix 2045 develop hira (#2049) Co-authored-by: jprestop <jpresto@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu> Co-authored-by: Seth Linden <linden@ucar.edu> Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com> Co-authored-by: hsoh-u <hsoh@ucar.edu> Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@seneca.rap.ucar.edu> Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu> Co-authored-by: mo-mglover <78152252+mo-mglover@users.noreply.github.com> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu> Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu> Co-authored-by: davidalbo <dave@ucar.edu> Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
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Added support for running ensemble_stat on a single file that contains all ensemble members.
Changes include:
Expected Differences
New configuration file options for ensemble_stat: ens_member_ids and control_id
Pull Request Testing
Added unit tests that demonstrate new functionality
Review code changes, run ensemble_stat unit tests and ensure that they all pass (new data for testing is available on seneca and kiowa)
Do these changes include sufficient documentation updates, ensuring that no errors or warnings exist in the build of the documentation? [Yes]
Do these changes include sufficient testing updates? [Yes]
Will this PR result in changes to the test suite? [Yes]
New output will be generated from 4 new unit tests. No other differences should result.
Pull Request Checklist
See the METplus Workflow for details.
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Select: Milestone as the version that will include these changes