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Update develop-ref after #2010 and #2029 #2030
Commits on Oct 26, 2021
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Per #1906, modify code to pass entire path to make_temp_file_name ins…
…tead of only the filename so that the function can tell whether or not the file exists. (#1952) Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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Commits on Nov 3, 2021
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Feature 1761 percent thresh (#1956)
* Per issue #1761 in set_perc() adding code to get FBIAS numeric value, like 1.0 or 0.9, etc. SL * Per issue #1761: in set_perc(), modified actual percentile calculation at end to use the extracted FBIAS numeric value (float). SL * Per issue #1761: modified the check on the perc_thresh_freq_bias, just has to be > 0 now. SL * Per issue #1761: cleaned up code in set_perc(). SL * Per #1761, updates to Simple_Node::set_perc() to handle variable frequency bias amounts. Changes include: - Reverting the formatting of this back to how it originally was in the develop branch. In general, just match the formatting of the existing file, so as the minimize the number of difference lines. - Add logic to adjust the percentile to be found based on the requested FBIAS value. Multiplying or dividing the percentile by the FBIAS value depends on the inequality type and whether we're bias adjusting the forecast or observation data. - Adjust the log messages slightly. Please be aware that I'm not totally confident in these changes. They warrant much more testing. This logic is very, very confusing. * Per #1761, call compute_percentile() when double-checking the percentile values. * Per #1761, remove unused variable. * Per #1761, add warning for percentiles > 100. * Per #1761. In set_perc(), after testing cleaned up code. SL * Per issue #1761: adding new config file for testing dynamic FBIAS values. SL * Per issue #1761: added new unit test for dynamic FBIAS values when running grid_stat. SL * Per issue #1761, modified FBIAS section to indicated that the user can use dynamic values that are not 1.0. SL * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update met/docs/Users_Guide/config_options.rst Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Update test/config/GridStatConfig_fbias_perc_thresh Co-authored-by: johnhg <johnhg@ucar.edu> * Per issue #1761, set nc_pairs_flag = FALSE. SL Co-authored-by: Seth Linden <linden@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
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Hotfix after merging changing for #1761. Updating the list of expecte…
…d output files.
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Per #1905, committing a hotfix directly to the develop branch. Revert…
…ing the logic for computing the ensemble range back to what it was previously. The new version produced very slight differences in the 6-th or 7-th decimal place when compared to previous results. There's not good reason for these changes which were caused by the order of operations in casting from doubles to floats. Reverting back to the old logic prevents diffs for anyone else downstream and is the prudent choice.
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Commits on Nov 4, 2021
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Hotfix for the develop branch to get met-10.1.0-beta4 compiling on WC…
…OSS. The intel compiler does not allow adjacent >> characters when defining maps.
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Updating the beta4 release date from 11/16 to 11/17 since the beta4 r…
…elease needs to be recreated.
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Commits on Nov 19, 2021
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Commits on Nov 29, 2021
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#1936 Excludes precip3hr, precip6hr, precip12hr, and precip10min from…
… required variables for MESONET
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Commits on Dec 1, 2021
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Per #1985, correcting typo found while creating V10.0.1 in the develo…
…p branch as well.
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Per #1985, VERY minor change to fix alignment of titles in Point-Stat…
…... updating the develop branch.
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#1936 Added an unit test for newer MESONET file
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Commits on Dec 2, 2021
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Merge pull request #1984 from dtcenter/feature_1936_madis_nc2
Bugfix 1936 develop madis2nc
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Commits on Dec 28, 2021
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#1844 Added vx_pointdata_python
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#1844 Added vx_pointdata_python to PYTHON_LIBS & make file for vx_poi…
…ntdata_python
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#1844 Added vx_pointdata_python to SUBDIRS
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#1844 Added met_point_data.cc & met_point_data.h
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#1844 NcHeaderData is renamed to MetPointHeader and moved to met_poin…
…t_dataq.h
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#1844 NcPointObsData is derived from MetPointObsData. Many methods ar…
…e moved to the base class MetPointObsData
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#1844 Moved varianbles and methods to the base class MetPointData
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#1844 override the obs_data pointer to the derived class
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#1844 Added pyobject_as_bool & pyobject_as_string_array
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#1844 Cleanup include statements and addpointdata_python.h if python …
…is enabled
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#18443 Support python embedding
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#1965 Excludes the duplicated variable names from multiple input files
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#1965 Processed with the raw variable names and update them when the …
…output is saved.
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#1965 Added unit test ioda2nc_same_input
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#1965 Processed with the raw variable names and update them when the …
…output is saved.
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#1965 Added unit test ioda2nc_same_input
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Merge pull request #2006 from dtcenter/feature_1965_ioda2nc_same_input
Feature 1965 ioda2nc same input
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Update the development environment for seneca to add /usr/local/nco/b…
…in and /usr/local/netcdf/bin to the path. Also define MET_TEST_RSCRIPT to point to a new enough version of RSCRIPT that has the ncdf4 package 1.17 or later.
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Fixup the Rscript diffing logic to support running the nightly build …
…on seneca. The problem here is that the ncdiff -x -v command line options that worked in version 4.7.0 NO LONGER work in 4.9.2. Added a check to skip over the time_bounds variable when processing the ncdiff output.
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No real changes here. Just formatting
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Feature 1974 message_type_group_map (#1999)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Feature 1996 uninitialized variables (#2004)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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Feature 1695 ensemble single file (gen_ens_prod) (#2001)
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Feature 1965 NB faile with time summary by ioda2nc (#2008)
Co-authored-by: Howard Soh <hsoh@kiowa.rap.ucar.edu>
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#1844 Added log message for use_var_id
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#1844 Get use_var_id for python embedding
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#1844 Added met_point_obs.py and read_met_point_obs.py
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#1844 Added 4 unit test for python embedding of MET point data
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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More changes to test_util.R to account for differences between 4.7.0 …
…and 4.9.2 of ncdiff. The earlier version reported 0 diffs for the time_bounds, lat, lon, latitude, and longitude variables while the newer version reports their raw values. Simply ignore these variables for now. This isn't a great solution but when we reimplement this testing logic in python, we can address this issue then.
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#1844 Added python embedding for point observation data
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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Feature 1926 gridstat openmp (#1977)
Co-authored-by: johnhg <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
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feature 1695 ensemble single file (ensemble_stat) (#2007)
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Committing directly to the develop branch. Removing many, many instan…
…ces of MET_BUILD_BASE and a couple instances of MET_BASE from the examples listed in Appendix A. The inconsistent use of these variables will only cause confusion. Removing them will help avoid that confusion. Big picture... MET_BASE defines the installed 'share/met' directory. It can be used to reference the location of map or polyline files. MET_BUILD_BASE is only used in the context of the test scripts. There, it's defined as the top-level source code directory in which the code was compiled. Its used to reference the location of sample data files or Rscript included in the tarball. I left a couple references to these variables in Appendix A where thier use is not confusing. But I removed all instances which are used to the define the location of the 'bin' directory. Instead, let's just assume the MET binaries are already in their path... or the user knows where to find them.
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feature 1695 fix issues with ensemble changes (#2012)
Co-authored-by: John Halley Gotway <johnhg@ucar.edu> Co-authored-by: John Halley Gotway <johnhg@kiowa.rap.ucar.edu>
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Hotfix for #1695 committed directly to the develop branch. The new En…
…semble-Stat config files added for this issue don't define a random number generator seed. This results in different output for each run and prevents the regression test from producing repeatable results. Defining the seed here to fix that.
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Merge remote-tracking branch 'origin/develop' into feature_1844_pytho…
…n_embedding
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#1844 Make met_point_obs as abstract class
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#1844 correctedb for loop end condition on processing obs bdata
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#2020 Added SonarQube related varibales
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#2015 Avoid the repeasted debug message if derived varibales are disa…
…bled
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#1996 Initialize right and left
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#1966 Call clear() instead of reset memory for Header variable
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#1966 Make sure the levels from variable does not exceed the maxLevel
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#1966 Removed unreachable codes
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#1966 Do not write into NetcDF if empty data
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Merge pull request #2010 from dtcenter/feature_1844_python_embedding
Feature 1844 python embedding
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#2015 Corrected "retained or derived" count
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Merge pull request #2024 from dtcenter/feature_2020_run_sonarqube
Feature 2020 run sonarqube
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Merge pull request #2026 from dtcenter/feature_2015_pb2nc_debug_message
fesature 2015 pb2nc repeated debug messages
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Feature 1546 CI testing (#2029)
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
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fixed broken workflow by setting environment variable expected for do…
…cker build script
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