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Update develop-ref after #2202 #2205

Merged
merged 792 commits into from
Jun 7, 2023
Merged

Update develop-ref after #2202 #2205

merged 792 commits into from
Jun 7, 2023
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Commits on Jul 27, 2022

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  4. log error and increment error count if required lat/lon bound variabl…

    …es are not set instad of calling sys.exit
    georgemccabe committed Jul 27, 2022
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Commits on Jul 28, 2022

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Commits on Aug 3, 2022

  1. Update index.rst

    replace METdatadb with METdataio
    bikegeek authored Aug 3, 2022
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  2. Update metdatadb.rst

    Replace metdatadb with metdataio
    bikegeek authored Aug 3, 2022
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  3. renamed from metdatadb

    bikegeek committed Aug 3, 2022
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  9. Update the Release Guide while creating the MET-11.0.0-beta2 developm…

    …ent release. Automatic Zenodo updates for each MET release have been DISABLED since they were being created for each development release. Revise the MET instructions to manually update the MET version on Zenodo only for official releases, not development or bugfix releases.
    JohnHalleyGotway committed Aug 3, 2022
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  10. Merge pull request #1722 from dtcenter/feature_1402_config_cleanup_mo…

    …del_app
    
    Feature #1402 config cleanup model applications
    hankenstein2 authored Aug 3, 2022
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  11. Changed version number

    hankenstein2 committed Aug 3, 2022
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  12. Added release notes

    hankenstein2 committed Aug 3, 2022
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  13. Merge pull request #1727 from dtcenter/feature_1726_V5.0.0-beta2

    Feature 1726 v5.0.0 beta2
    hankenstein2 authored Aug 3, 2022
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Commits on Aug 4, 2022

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Commits on Aug 8, 2022

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Commits on Aug 10, 2022

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Commits on Aug 16, 2022

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Commits on Aug 17, 2022

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  2. Feature 1746 recreate release (#1751)

    * Adding instructions for recreating and existing release
    
    * Reorder the step's based on suggestions from @georgemccabe
    jprestop authored Aug 17, 2022
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Commits on Aug 22, 2022

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Commits on Aug 23, 2022

  1. Fixing typo

    jprestop committed Aug 23, 2022
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Commits on Aug 24, 2022

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Commits on Aug 26, 2022

  1. Feature update labels (#1765)

    * Modifications for METbaseimage
    
    * Update README.md
    
    Co-authored-by: johnhg <johnhg@ucar.edu>
    jprestop and JohnHalleyGotway authored Aug 26, 2022
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Commits on Aug 30, 2022

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  2. Per dtcenter/METplus-Internal#20, change log output to always include…

    … username and include user ID if it is available
    georgemccabe committed Aug 30, 2022
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Commits on Sep 1, 2022

  1. Per dtcenter/METplus-Internal#20, fixed bug introduced from commit 45…

    …8714c to develop where error is thrown if username cannot be obtained, which occurs in environment running GHA tests
    georgemccabe committed Sep 1, 2022
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  2. Revert "Per dtcenter/METplus-Internal#20, fixed bug introduced from c…

    …ommit 458714c to develop where error is thrown if username cannot be obtained, which occurs in environment running GHA tests"
    
    This reverts commit fb2d093.
    georgemccabe committed Sep 1, 2022
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  3. Revert "Per dtcenter/METplus-Internal#20, change log output to always…

    … include username and include user ID if it is available"
    
    This reverts commit 458714c.
    georgemccabe committed Sep 1, 2022
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Commits on Sep 6, 2022

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Commits on Sep 7, 2022

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Commits on Sep 8, 2022

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  2. Feature dtcenter/METplus-Internal#15 checksum for release (#1769)

    Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
    georgemccabe and jprestop authored Sep 8, 2022
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Commits on Sep 9, 2022

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  5. Updating note format

    jprestop authored Sep 9, 2022
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  7. Revert "update Python version to 3.8.6"

    This reverts commit c1e6cbc.
    georgemccabe committed Sep 9, 2022
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Commits on Sep 12, 2022

  1. added return value checking to error and exit a non-zero value if doc…

    …ker build or docker push fail
    georgemccabe committed Sep 12, 2022
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Commits on Sep 19, 2022

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  3. Feature #1330 MJO ENSO use case (#1794)

    Co-authored-by: cristianastan2 <cstan@gmu.edu>
    georgemccabe and cristianastan2 authored Sep 19, 2022
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Commits on Sep 21, 2022

  1. Feature #1816 ensemble vx removal from EnsembleStat (#1820)

    Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
    georgemccabe and JohnHalleyGotway authored Sep 21, 2022
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  2. Feature #1816 rename cases and files (#1823)

    Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
    georgemccabe and JohnHalleyGotway authored Sep 21, 2022
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  5. info for new use case

    j-opatz committed Sep 21, 2022
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  10. Feature #1817 5.0.0-beta3 release (#1825)

    Co-authored-by: bikegeek <minnawin@ucar.edu>
    georgemccabe and bikegeek authored Sep 21, 2022
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  11. Update VERSION

    georgemccabe authored Sep 21, 2022
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Commits on Sep 27, 2022

  1. updated file name

    j-opatz committed Sep 27, 2022
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Commits on Sep 29, 2022

  1. updated MET file locations

    j-opatz committed Sep 29, 2022
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Commits on Oct 3, 2022

  1. explicitly set units for obs read via python embedding since PR dtcen…

    …ter/MET#2288 no longer guesses units based on grib table units (which can be inaccurate of the actual data)
    georgemccabe committed Oct 3, 2022
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Commits on Oct 4, 2022

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Commits on Oct 5, 2022

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  2. Merge pull request #1839 from dtcenter/feature_1808_POE_temp_useCase

    Feature 1808 poe temp use case
    hankenstein2 authored Oct 5, 2022
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  4. Feature 1847 release (#1850)

    * Per #1847, moved release notes to be its own chapter, reformatted component release notes, and added new section for upgrade instructions
    
    * Per #1847, added release-notes internal tag
    
    * Per #1847, fix error and reformat link
    
    * Per #1847, modified release instructions to add a section about upgrade instructions
    
    * Per #1847, modified release instructions to add a section about upgrade instructions
    
    * Per #1847, resolve doc warnings
    
    * Per #1847, updated instructions for clarity.
    
    * Per #1847, modified text and link.
    
    * Per #1847, modified wording and resolve error with note
    jprestop authored Oct 5, 2022
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Commits on Oct 13, 2022

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Commits on Oct 20, 2022

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Commits on Oct 24, 2022

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Commits on Oct 25, 2022

  1. Feature 1852 use case physics tendency (#1881)

    * Issue #1852 initial work for the Planview plot
    
    * Issue #1852 planview plot for physics tendency
    
    * issue #1852 cleared away unused/unneccessary code
    
    * Issue #1852 update script command
    
    * Issue #1852 first draft, doesn't have correct content
    
    * Issue #1852 updated name of output plot to include short_range in name
    
    * Issue #1852 renamed to include fcstOnly label
    
    * Issue #1852 initial commit
    
    * Issue #1852
    
    * Issue #1852
    
    * Issue #1852 initial commit
    
    * issue #1852 vertical cross section
    
    * Issue 1852 clean up unused lines
    
    * Issue #1852 initial commit
    
    * Issue #1852
    
    * Issue #1852 updates
    
    * Issue #1852 fixed documentation warnings, but some problems remain
    
    * fixing line length for chapter and section headers and one letter capitalization
    
    * cleaning up line spacing and trying to fix a critical error.
    
    * trying to fix critical error again
    
    * Issue #1852 more description for data and dependency on METplotpy with additional instructions
    
    * Issue #1852 update location of input data to single directory
    
    * Removing duplicate files with a misformatted name that are not needed
    
    * Per #1852, making changes to formatting to eliminate errors
    
    * Issue #1852 remove redundant yaml config file
    
    * Issue #1852 update PYTHONPATH information
    
    * Issue #1852 fixed conflicts
    
    * Issue #1852 update path to shapefile
    
    * Issue #1852 fixed copy and paste error
    
    * Issue #1852 add three use case entries: Planview, VerticalProfile, and VerticalCrossSection for the short range Physics tendency use case
    
    * Issue #1852 add latest short range tests to top, move down list when everything passes
    
    * Update use_case_groups.json
    
    move short_range use cases #10-12 to below the short range test for #9
    
    * Issue #1852 clean up conf files by providing variables for the input netCDF files and for the planview plot, allow user to indicate pressure levels
    
    * Issue #1852 Indicate external Python packages
    
    * Issue #1852 added external dependency section
    
    * removed env vars that don't need to be set -- METPLOTPY_BASE is set by the automated test conf (.github/parm/test_settings.conf) and PYTHONPATH doesn't need to be set because METplotpy is installed in Python environment for use case tests
    
    * Update UserScript_fcstFV3_fcstOnly_PhysicsTendency_Planview.py
    
    Fixed one typo
    
    * Update UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalCrossSection.py
    
    Fixed a typo
    
    * Update UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.py
    
    Same typo, same fix
    
    * Issue #1852 remove extraneous entry for USER_SCRIPT_COMMAND, a hold-over from the original implementation which doesn't allow the user to easily specify the FV3 history file and grid spec netCDF file
    
    * Update UserScript_fcstFV3_fcstOnly_PhysicsTendency_VerticalProfile.conf
    
    Removed the incorrect USER_SCRIPT_COMMAND in previous commit.  Reinstated the correct version and removed the incorrect command.
    
    * update html file from Planview to VerticalProfile
    
    Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
    Co-authored-by: Julie Prestopnik <jpresto@seneca.rap.ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    Co-authored-by: Hank Fisher <fisherh@ucar.edu>
    5 people authored Oct 25, 2022
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Commits on Oct 26, 2022

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Commits on Oct 28, 2022

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Commits on Nov 1, 2022

  1. updated paths, documentation

    j-opatz committed Nov 1, 2022
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Commits on Nov 3, 2022

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  3. added picture

    j-opatz committed Nov 3, 2022
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Commits on Nov 4, 2022

  1. Correct spelling mistake

    j-opatz authored Nov 4, 2022
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  2. Merge pull request #1908 from dtcenter/feature_1482_useCase_buoyData

    Feature 1482 use case buoy data
    hankenstein2 authored Nov 4, 2022
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  3. Merge pull request #1914 from dtcenter/feature_1828_useCase_cocorahs

    Feature 1828 use case cocorahs
    hankenstein2 authored Nov 4, 2022
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  7. per #1910, added time util function to add field info to time info di…

    …ctionary and updated wrapper logic to use this function to add this info instead of passing field info (var_info) to CommandBuilder.find_data to get level info, ci-run-all-diff
    georgemccabe committed Nov 4, 2022
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  8. change logic to preserve full level string for [fcst/obs]_level so Se…

    …riesAnalysis cases build the same file names, but parse out time info for setting generic level for string sub to preserve previous behavior
    georgemccabe committed Nov 4, 2022
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Commits on Nov 7, 2022

  1. removed commented code

    georgemccabe committed Nov 7, 2022
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  3. add quotes around input files to plot_point_obs command to allow supp…

    …ort for Python Embedding as input
    georgemccabe committed Nov 7, 2022
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  6. remove commented code

    georgemccabe committed Nov 7, 2022
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  7. per #1910, added unit tests to ensure that level is set properly in t…

    …he forecast input template
    georgemccabe committed Nov 7, 2022
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Commits on Nov 10, 2022

  1. added script to create geovista conda environment via Docker to use i…

    …n the automated use case tests
    georgemccabe committed Nov 10, 2022
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Commits on Nov 11, 2022

  1. Feature 1561 use case ugrid python embedding (#1927)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    willmayfield and georgemccabe authored Nov 11, 2022
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  2. Feature 1453 use case iodav2 python embedding (#1930)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    willmayfield and georgemccabe authored Nov 11, 2022
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  4. Merge pull request #1919 from dtcenter/bugfix_1910_develop_ensemble_s…

    …tat_lev_in_fcst
    
    Bugfix #1910 develop EnsembleStat level in forecast input template
    hankenstein2 authored Nov 11, 2022
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  1. Feature #1819 alert users if updates to EnsembleStat use cases are ne…

    …eded (#1945)
    
    Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
    georgemccabe and DanielAdriaansen authored Nov 16, 2022
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  3. Feature #1898 tc new options (#1932)

    close undefined
    georgemccabe authored Nov 16, 2022
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  2. Feature #1953 seeps config in GridStat and PointStat (#1954)

    Co-authored-by: johnhg <johnhg@ucar.edu>
    georgemccabe and JohnHalleyGotway authored Nov 17, 2022
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  5. Update VERSION

    georgemccabe authored Nov 17, 2022
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  1. Feature #1885 gh_projects (#1973)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    JohnHalleyGotway and georgemccabe authored Dec 1, 2022
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Commits on Dec 2, 2022

  1. Update formatting of the GitHub project filters so that they can be c…

    …opy/pasted directly from RTD into the GitHub project filter.
    JohnHalleyGotway committed Dec 2, 2022
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Commits on Dec 5, 2022

  1. Feature #1711, #1783, #1814, and #1835 Documentation - Multiple files…

    …, PCPCombine constant init, Docker instructions, and MET links (#1967)
    
    Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
    georgemccabe and DanielAdriaansen authored Dec 5, 2022
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  2. run diff logic on push for develop and main_v* branches, fix logic to…

    … properly run all use cases
    georgemccabe committed Dec 5, 2022
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Commits on Dec 6, 2022

  1. fixed name of external

    georgemccabe committed Dec 6, 2022
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Commits on Dec 7, 2022

  1. Update overview.rst

    Removed statsmodels from the table, this package is no longer a requirement.  The necessary functionality was pulled out of the statsmodels repository and incorporated into the METcalcpy repository
    bikegeek authored Dec 7, 2022
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  2. Update overview.rst

    METdataio *must* only use pandas 1.2.3.  METdataio also requires pyyaml.
    bikegeek authored Dec 7, 2022
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  3. Update overview.rst

    METdatio uses pytest to test aspects of the METreformat module
    bikegeek authored Dec 7, 2022
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  4. Update rotate_authorship.rst

    Explicitly add the step to commit and push changes to the file containing the author list.
    bikegeek authored Dec 7, 2022
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  5. Update overview.rst

    Added METdataio for lxml, numpy, pandas, and pymysql
    bikegeek authored Dec 7, 2022
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Commits on Dec 8, 2022

  1. Update finalize_release_on_github_official.rst

    added branch protection rules step and the interface to Github was modified, you need to click on the stacked '->' icon to switch default branches
    bikegeek authored Dec 8, 2022
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  3. Update overview.rst

    included METdataio for python 3.8.6+ requirement
    bikegeek authored Dec 8, 2022
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  4. Update overview.rst

    psutil no longer needed in METplotpy and METcalcpy
    bikegeek authored Dec 8, 2022
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  5. Update overview.rst

    METcalcpy no longer requires imutils and allow versions 0.5.3 and above
    bikegeek authored Dec 8, 2022
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  6. Update overview.rst

    cleaned up formatting for imutils
    bikegeek authored Dec 8, 2022
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  3. Feature 1819 format doc (#1981)

    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    lisagoodrich and georgemccabe authored Dec 9, 2022
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  6. Feature #1986 v5.0.0 release (#1987)

    Closes #1986
    georgemccabe authored Dec 9, 2022
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  1. allow rest of workflow to run even if job to update data volumes fail…

    …s in case server is down
    georgemccabe committed Dec 13, 2022
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  2. updated version for action to update input data volumes and added max…

    … number of DockerHub tag pages to search to 15
    georgemccabe committed Dec 13, 2022
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  3. updated release notes for official METplus release to untar the sampl…

    …e data for next version directory
    georgemccabe committed Dec 13, 2022
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Commits on Dec 15, 2022

  1. install library needed for geovista package, remove editable flag so …

    …geovista code will be added directly to python instead of reading it from the source code location, ci-skip-all
    georgemccabe committed Dec 15, 2022
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Commits on Jan 19, 2023

  1. fixed bug to set environment variables in the RegridDataPlane environ…

    …ment instead of the PyEmbedIngest environment
    georgemccabe committed Jan 19, 2023
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Commits on Jan 25, 2023

  1. Feature #2015 modulefiles (#2024)

    * Adding modulefile for WCOSS2
    
    * Updated references of 4.1.1 to 5.0.0
    jprestop authored Jan 25, 2023
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  3. add use case group name to output path so that output and error logs …

    …will contain use case category to more easily see which case was run
    georgemccabe committed Feb 16, 2023
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  4. add token to checkout

    georgemccabe committed Feb 17, 2023
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  2. Updated color for bold label

    jprestop committed Feb 23, 2023
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  2. per #2006, fix priority of obs_window config variables so that wrappe…

    …r-specific version is preferred over generic OBS_WINDOW_BEGIN/END (#2062)
    georgemccabe authored Feb 28, 2023
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  3. Feature 2065 v5.1.0 beta1 (#2066)

    * updated version number
    
    * added release notes
    
    * Update docs/Users_Guide/release-notes.rst
    
    Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
    
    ---------
    
    Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
    j-opatz and JohnHalleyGotway authored Feb 28, 2023
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  4. updated version with -dev

    j-opatz committed Feb 28, 2023
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  3. fixed tab vs spaces

    georgemccabe committed Mar 8, 2023
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Commits on Mar 14, 2023

  1. added commented process list that was accidentally removed -- this is…

    … used if the pre-processing steps are needed
    georgemccabe committed Mar 14, 2023
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Commits on Mar 16, 2023

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  2. Feature 2076 release dropdown menu (#2083)

    * test dropdowns
    
    * Update release-notes.rst
    
    Attempting to resolve WARNING
    
    * testing dropdowns
    
    * adding dropdown menus
    
    * testing dropdown
    
    remove from warning section
    
    * dropdown testing
    
    * dropdown menu tests
    
    * dropdown menus
    
    after the warnings section, the dropdown menu only has one space instead of the normal 2 spaces.  If it has 2 spaces, it gets sucked into the warning section.
    
    * spaces with warning
    
    * no spaces for warning
    
    * Update release-notes.rst
    
    warning note has to be indented 1 space.  Originally it was no spaces but then all of the dropdown menus end up in the warning message.  If it's 2 spaces, as is normal, then the warning is indented, which is unnecessary.  1 space is slightly indented and keeps the dropdown menus separate.
    
    ---------
    
    Co-authored-by: jprestop <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Mar 16, 2023
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Commits on Apr 4, 2023

  1. Bugfix #2096/#2098 develop - fix skip if output exists and do not err…

    …or if no commands were run (#2099)
    georgemccabe authored Apr 4, 2023
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Commits on Apr 6, 2023

  1. Feature 1516 use case mvmode (#2094)

    Co-authored-by: Tracy Hertneky <hertneky@seneca.rap.ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    3 people authored Apr 6, 2023
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Commits on Apr 10, 2023

  1. Fix for Dockerfile smell DL4000 (#2112)

    Co-authored-by: Giovanni Rosa <giovanni.rosa@unimol.it>
    2 people authored and georgemccabe committed Apr 10, 2023
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Commits on Apr 26, 2023

  1. Bugfix #2082 develop regrid.convert/censor_thresh/censor_val (#2140)

    fix #2082 main_v5.0 regrid.convert/censor_thresh/censor_val (#2101)
    georgemccabe authored Apr 26, 2023
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Commits on Apr 28, 2023

  1. Feature #1977 ARGO use case (#2148)

    Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
    georgemccabe and j-opatz authored Apr 28, 2023
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  2. Feature develop cycle change (#2150)

    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * change PROJECT ASSIGNMENT to CYCLE ASSIGNMENT
    
    * Added paths to ignore
    
    ---------
    
    Co-authored-by: jprestop <jpresto@ucar.edu>
    lisagoodrich and jprestop authored Apr 28, 2023
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Commits on May 3, 2023

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  3. update workflow to update input test data to use branch from pull dow…

    …n or enter branch by hand if branch does not exist in dtcenter/METplus repo, e.g. if updating data for a PR coming from a fork
    georgemccabe committed May 3, 2023
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Commits on May 5, 2023

  1. changed order of workflow event triggering info to more easily see th…

    …e repository and commit sha that triggered the workflow
    georgemccabe committed May 5, 2023
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Commits on May 11, 2023

  1. fix docker compose install and call -- needed due to new Alpine Linux…

    … release 3.18.0 that does not include docker-compose in the apk repository
    georgemccabe committed May 11, 2023
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Commits on May 17, 2023

  1. Feature 1978 update pyreq doc (#2177)

    * Updating for 5.1.0
    
    * Adding greater than or equal to signs
    jprestop authored May 17, 2023
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Commits on May 22, 2023

  1. Feature 2106 release support (#2182)

    * Added a paragraph for Release Support Policy
    
    * Added a sentence about contacting the team through the METplus GitHub Discussions Forum.
    jprestop authored May 22, 2023
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  3. Per #2159, modify instructions to reflect that we only want a coordin…

    …ated release for the official releases and updates to the coordinated release section for the bugfix releases. (#2183)
    jprestop authored May 22, 2023
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Commits on May 24, 2023

  1. Feature 2147 workflow doc (#2185)

    * Add new images for github workflow
    
    * Added PR section
    
    * Modified the Find the GitHub Issue to be Find or Create a GitHub issue
    
    * Trying out image keyword compared with figure keyword
    
    * Trying out various widths
    
    * Added new figures
    
    * Reverting to figures from images after modifying figures
    
    * Adding the old images which are better quality
    
    * Trying out new indention
    
    * Working on formatting again
    
    * Reducing image widths
    
    * Update docs/Contributors_Guide/github_workflow.rst
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update docs/Contributors_Guide/github_workflow.rst
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update docs/Contributors_Guide/github_workflow.rst
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    
    * Update github_workflow.rst
    
    ---------
    
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    jprestop and georgemccabe authored May 24, 2023
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Commits on May 25, 2023

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Commits on Jun 5, 2023

  1. Feature 2011 tci from cesm fluxnet2015 netcdf (#2192)

    Co-authored-by: Mrinal Biswas <biswas@seneca.rap.ucar.edu>
    Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
    3 people authored Jun 5, 2023
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Commits on Jun 6, 2023

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  4. added to release notes

    georgemccabe committed Jun 6, 2023
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  10. updated script to use metplotpy as base and install pygrib because co…

    …nda was failing trying to install matplotlib in Docker for some strange reason
    georgemccabe committed Jun 6, 2023
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Commits on Jun 7, 2023

  1. Feature 2188 use case panda c (#2202)

    * added first use case, need to finish docs and add to list
    
    * added documentation files, 3 new cases
    
    * added 5th use case, docs
    
    * final use case, corrected paths for output
    
    * Update GridStat_fcstGFS_obsERA5_lowAndTotalCloudFrac.py
    
    * removed chars, added space to last section
    j-opatz authored Jun 7, 2023
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