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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

Popular repositories Loading

  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 235 repositories
  • eggd_picardqc Public
    eastgenomics/eggd_picardqc’s past year of commit activity
    Shell 0 0 4 0 Updated Nov 28, 2024
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 3 3 Updated Nov 28, 2024
  • s3_upload Public

    Uploads Illumina sequencing runs into Amazon S3 storage

    eastgenomics/s3_upload’s past year of commit activity
    Python 0 MIT 1 4 0 Updated Nov 28, 2024
  • eggd_ici_uploader Public
    eastgenomics/eggd_ici_uploader’s past year of commit activity
    Shell 0 MIT 0 2 0 Updated Nov 28, 2024
  • eggd_vep_uranus_config Public

    Json configuration file for the implementation of VEP for the MYE assay.

    eastgenomics/eggd_vep_uranus_config’s past year of commit activity
    0 0 0 0 Updated Nov 28, 2024
  • eggd_uranus_main_workflow Public

    DNAnexus Uranus workflow to support the Haem-Onc myeloid project

    eastgenomics/eggd_uranus_main_workflow’s past year of commit activity
    2 0 1 0 Updated Nov 28, 2024
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config’s past year of commit activity
    2 MIT 0 1 0 Updated Nov 28, 2024
  • rd_wgs_workbooks_monitoring Public

    Monitor progrees of RD WGS workbooks generation

    eastgenomics/rd_wgs_workbooks_monitoring’s past year of commit activity
    Python 0 0 3 0 Updated Nov 28, 2024
  • eggd_dias_single_workflow Public

    Workflow definition for Dias single

    eastgenomics/eggd_dias_single_workflow’s past year of commit activity
    2 0 0 0 Updated Nov 28, 2024
  • NGS_Tar_deletion Public

    automated deletion of NGS .tar files on DNAnexus

    eastgenomics/NGS_Tar_deletion’s past year of commit activity
    0 0 0 0 Updated Nov 27, 2024
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