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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

Popular repositories

  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 227 repositories
  • eggd_vep_helios_config Public
    eastgenomics/eggd_vep_helios_config’s past year of commit activity
    0 MIT 0 1 1 Updated Aug 23, 2024
  • GitHub_Actions Public

    Repository to hold GitHub Actions automated workflows.

    eastgenomics/GitHub_Actions’s past year of commit activity
    0 MIT 0 3 1 Updated Aug 23, 2024
  • trendyQC Public

    Django app for monitoring trends in MultiQC data

    eastgenomics/trendyQC’s past year of commit activity
    0 MIT 0 36 2 Updated Aug 23, 2024
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config’s past year of commit activity
    2 MIT 0 1 0 Updated Aug 23, 2024
  • egg4_dias_TWE_config Public

    Config for the Dias TWE assay

    eastgenomics/egg4_dias_TWE_config’s past year of commit activity
    1 0 0 0 Updated Aug 23, 2024
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 2 2 Updated Aug 23, 2024
  • eggd_vep_CEN_config Public

    Json configuration file for the implementation of VEP for the CEN assay.

    eastgenomics/eggd_vep_CEN_config’s past year of commit activity
    1 MIT 0 1 0 Updated Aug 23, 2024
  • eggd_vep_TWE_config Public

    Json configuration file for the implementation of VEP for the TWE assay.

    eastgenomics/eggd_vep_TWE_config’s past year of commit activity
    1 MIT 0 1 0 Updated Aug 23, 2024
  • eggd_GATKgCNV_call Public
    eastgenomics/eggd_GATKgCNV_call’s past year of commit activity
    Shell 1 MIT 0 4 1 Updated Aug 22, 2024
  • clinvar_submissions Public

    All in one ClinVar submission process

    eastgenomics/clinvar_submissions’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 22, 2024
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