Add simulate_scenarios() to easily calculate outbreak size distribution
#519
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # Reproduce locally by running: | |
| # ```r | |
| # pak::pak(c("any::rcmdcheck", "."), dependencies = "Config/Needs/check") | |
| # rcmdcheck::rcmdcheck() | |
| # ``` | |
| on: | |
| push: | |
| branches: [main, master] | |
| paths: | |
| - 'data/**' | |
| - 'R/**' | |
| - 'inst/**' | |
| - 'man/**' | |
| - 'src/**' | |
| - 'tests/**' | |
| - 'vignettes/**' | |
| - 'DESCRIPTION' | |
| - 'NAMESPACE' | |
| - 'LICENSE' | |
| - '.Rbuildignore' | |
| - '.github/workflows/R-CMD-check.yaml' | |
| merge_group: | |
| pull_request: | |
| paths: | |
| - 'data/**' | |
| - 'R/**' | |
| - 'inst/**' | |
| - 'man/**' | |
| - 'src/**' | |
| - 'tests/**' | |
| - 'vignettes/**' | |
| - 'DESCRIPTION' | |
| - 'NAMESPACE' | |
| - 'LICENSE' | |
| - '.Rbuildignore' | |
| - '.github/workflows/R-CMD-check.yaml' | |
| name: R-CMD-check | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| id: rcmdcheck | |
| with: | |
| upload-snapshots: true | |
| error-on: '"note"' | |
| # fail-fast but only if rcmdcheck step fails | |
| - name: Manual fail-fast | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| if: always() && steps.rcmdcheck.outcome == 'failure' | |
| run: gh run cancel ${{ github.run_id }} |