Developer tools

[ntorresd]

• What kind of change does this PR introduce? (Bug fix, feature, docs update, ...)

This PR updates the package template files:

• .github/workflows/pkgdown.yaml
• tests/spelling.R
• tests/testthat/helper-state.R
• tests/testthat/setup-options.R
• tools/check.env

In accordance to the discussion in November 2023 spring cleaning #101

[Bisaloo]

Could you also update the other GitHub Actions workflows please?

[ntorresd]

Could you also update the other GitHub Actions workflows please?

Done. Please let me know whether we should keep line 47 in test-coverage.yaml. @jpavlich , do you remember why we added this to the workflow?

[jpavlich]

Could you also update the other GitHub Actions workflows please?

Done. Please let me know whether we should keep line 47 in test-coverage.yaml. @jpavlich , do you remember why we added this to the workflow?

That was to be able to use development versions of rstan. Since we are sticking only to CRAN versions, I guess we don't need it anymore

[codecov-commenter]

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (6f0bd07) 76.25% compared to head (a954927) 76.16%.

❗ Current head a954927 differs from pull request most recent head e7e32cd. Consider uploading reports for the commit e7e32cd to get more accurate results

Files	Patch %	Lines
R/visualisation.R	0.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #134      +/-   ##
==========================================
- Coverage   76.25%   76.16%   -0.09%     
==========================================
  Files          10       10              
  Lines        1617     1611       -6     
==========================================
- Hits         1233     1227       -6     
  Misses        384      384              

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[Bisaloo]

Clean diff is here: https://github.com/epiverse-trace/serofoi/compare/developer-tools2?expand=1. Can I force push it here? Alternatively, are you able to rebase yourself? You'll have to run git rebase --skip on empty commits.

[ntorresd]

Clean diff is here: https://github.com/epiverse-trace/serofoi/compare/developer-tools2?expand=1. Can I force push it here?

Sure, please do. Sorry for the trouble.

[ntorresd]

Closes #86 and #101