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VCFAnnotator updates to skip REF alleles and emit correct INFO field definitions #299

Merged
merged 5 commits into from
Dec 15, 2023
Merged

VCFAnnotator updates to skip REF alleles and emit correct INFO field definitions #299

merged 5 commits into from
Dec 15, 2023

Commits on Dec 14, 2023

  1. Implemented compute_for_ref parameter to VCFAnnotator.annotate() method

    @ehclark
    ehclark committed Dec 14, 2023
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  2. Added unit test for VCF annotation with compute_for_ref=False

    @ehclark
    ehclark committed Dec 14, 2023
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  3. Change added VCF INFO field number to be R or A depending on whether … 

    …REF allele is included
    @ehclark
    ehclark committed Dec 14, 2023
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  4. Update unit test outputs to match changes to VCF INFO field definitions

    @ehclark
    ehclark committed Dec 14, 2023
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  5. Add option to skip REF alleles to command line interface

    @ehclark
    ehclark committed Dec 14, 2023
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