Update package versions used in the GCPy environment; Also update GitHub actions to avoid deprecation warnings #329
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yantosca
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topic: User Environment
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Thanks @msulprizio. I need to do more testing on this to make sure the benchmark outputs are OK with the updated libraries. |
GitHub is deprecating Node16.js and recommends updating to Node20.js, which requires updates of the following GitHub actions: - CodeQL - checkout - stale - publish-python Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
docs/environment_files/gcpy_environment.yml docs/environment_files/gcpy_requirements.yml - Updated Python to 3.1.0 - Updated esmf and esmpy to 8.6.1 - Updated xesmf to 0.8.5 - Other package dependencies were computed accordingly by Mamba docs/environment_files/read_the_docs_environment.yml docs/environment_files/read_the_docs_requirements.txt - Updated jinja2 to 3.1.4 (fixes a security issue) setup.py - Updated the package version numbers accordingly CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
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@msulprizio @lizziel: Here are some samples from GCC vs GCHP benchmark output. The GCHP vs. GCC comparisons show a lot of striping but this was present with the existing environment. Also, in the ship emissions, the there are an excessive number of tickmarks... but this is also present in plots generated from the existing environment. Maybe something to think about too.
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Describe the update
This is the companion PR to issues #326 and #328. These issues reported that GCPy installation from the Python Package Index (PyPi) failed due to the
xesmf==0.5.1package having been de-listed. We have made the following updates:docs/environment_files/gcpy_environment.ymlanddocs/environment_files/gcpy_requirements.txtto use the following package versions:python==3.12.0xesmf==0.8.5esmf==8.6.1esmpy==8.6.1docs/environment_files/read_the_docs_requirements.ymlanddocs/environment_files/read_the_docs_requirements.txtto use the following package versions:jinja2==3.1.4, this fixes a security issue raised by Dependabotcheckout@v4CodeQL@v3publish-python@v5Expected changes
This will be a zero-diff update. I have tested the 1-year benchmark scripts using a new Mamba environment with the updated package versions and all plots/tables were generated properly.
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