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Merge PR #2352 (Brewer chem fixes) into PR #2318 (Travis chem updates)
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This merge brings PR #2318 (K. Travis chemistry updates, based off
version 14.3.0) up-to-date with PR #2352 (J. Brewer chemistry updates
for ALK4, R4N2).

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
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136 changes: 136 additions & 0 deletions .github/ISSUE_TEMPLATE/bug-report.yml
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name: Bug or Issue Report
description: Report a bug or issue with GEOS-Chem
title: "Put a one-line description here"
labels: ["category: Bug"]
body:
- type: input
id: name
attributes:
label: Your name
validations:
required: true
- type: input
id: affiliation
attributes:
label: Your affiliation
validations:
required: true
- type: textarea
id: what-happened
attributes:
label: What happened? What did you expect to happen?
placeholder: Describe your issue
validations:
required: true
- type: textarea
id: steps-to-reproduce
attributes:
label: What are the steps to reproduce the bug?
placeholder: Explain what you did
validations:
required: true
- type: textarea
id: log-files
attributes:
label: Please attach any relevant configuration and log files.
description: Drag and drop files like the GEOS-Chem log file, geoschem_config.yml, HEMCO_Config.rc, HISTORY.rc, and build_info/summarize_build here. You may need to rename files to end in .txt first.
validations:
required: false
- type: input
id: version
attributes:
label: What GEOS-Chem version were you using?
placeholder: e.g. 14.4.0
validations:
required: true
- type: dropdown
id: machine
attributes:
label: What environment were you running GEOS-Chem on?
multiple: true
options:
- Local cluster
- AWS
- Personal computer
- Other (please explain below)
validations:
required: true
- type: input
id: compiler-version
attributes:
label: What compiler and version were you using?
placeholder: e.g. gcc 10.2.0, ifort 19.0.5.281
validations:
required: true
- type: dropdown
id: implemenation
attributes:
label: Will you be addressing this bug yourself?
description: If Yes, please also assign this issue to yourself (if possible)
multiple: false
options:
- "Yes"
- "Yes, but I will need some help"
- "No"
validations:
required: true
- type: dropdown
id: configuration
attributes:
label: In what configuration were you running GEOS-Chem?
description: If you are experiencing issues with GEOS-Chem in an external model, please contact that model's support. This repository is for tracking issues related to the GEOS-Chem science code base.
multiple: false
options:
- GCClassic
- GCHP
- Other (please explain in additional information section below)
validations:
required: true
- type: dropdown
id: simulation
attributes:
label: What simulation were you running?
description: If using full chemistry, specify extra options like benchmark, complexSOA, etc. in the additional information section below
multiple: false
options:
- Full chemistry
- Aerosol
- Carbon
- Hg
- POPs
- TagO3
- TransportTracers
- Trace metals
- CH4
- CO2
- TagCO
validations:
required: true
- type: input
id: resolution
attributes:
label: As what resolution were you running GEOS-Chem?
description: If running a nested grid simulation, please also specify the region.
placeholder: "e.g. 4x5, 2x2.5, 0.25x0.3125 NA, c48, c180"
validations:
required: true
- type: dropdown
id: meteorology
attributes:
label: What meterology fields did you use?
multiple: false
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- MERRA-2
- GCAP 2.0
- Other (please explain in additional information section below)
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required: true
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description: Please provide any additional information here that you think might be relevant.
validations:
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17 changes: 0 additions & 17 deletions .github/ISSUE_TEMPLATE/new-feature-or-discussion.md

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50 changes: 50 additions & 0 deletions .github/ISSUE_TEMPLATE/new-feature.yml
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name: Feature Request
description: Request a new GEOS-Chem feature
title: "Put a one-line description here"
labels: ["category: Feature Request"]
body:
- type: input
id: name
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label: Your name
validations:
required: true
- type: input
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attributes:
label: Your affiliation
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attributes:
label: Provide a clear and concise overview of the new feature requested.
validations:
required: true
- type: textarea
id: reference
attributes:
label: Reference(s)
description: If this is a science update, please provide a literature citation.
placeholder: "e.g. Bey et al., Global modeling of tropospheric chemistry with assimilated meteorology: Model description and evaluation, J. Geophys. Res., 106, 23,073-23,096, 2001."
validations:
required: false
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id: implemenation
attributes:
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description: If Yes, please also assign this issue to yourself (if possible)
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- "Yes, but I will need some help"
- "No"
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id: additional-info
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label: Additional information
description: Please provide any additional information here that you think might be relevant.
validations:
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23 changes: 23 additions & 0 deletions .github/ISSUE_TEMPLATE/question-discussion.yml
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name: Question or Discussion
description: Ask a question about GEOS-Chem or start a discussion
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labels: ["category: Question"]
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attributes:
label: Please provide a clear and concise description of your question or discussion topic.
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21 changes: 0 additions & 21 deletions .github/ISSUE_TEMPLATE/question-issue.md

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8 changes: 2 additions & 6 deletions .github/PULL_REQUEST_TEMPLATE.md
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Name:
Institution:

### Confirm you have reviewed the following documentation

- [ ] [Contributing guidelines](https://geos-chem.readthedocs.io/en/stable/help-and-reference/CONTRIBUTING.html)

### Describe the update

Please provide a clear and concise overview of the update.
Expand All @@ -19,6 +15,6 @@ Please provide details on how this update will impact model output and include p

If this is a science update, please provide a literature citation.

### Related Github Issue(s)
### Related Github Issue

Please link to the corresponding Github issue here. If fixing a bug, there should be an issue describing it with steps to reproduce.
Please link to the corresponding Github issue(s) here. If fixing a bug, there should be an issue describing it with steps to reproduce.
13 changes: 0 additions & 13 deletions .github/no-response.yml

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20 changes: 0 additions & 20 deletions .github/stale.yml

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31 changes: 31 additions & 0 deletions .github/workflows/stale.yml
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# This workflow warns and then closes issues that have had no activity for a specified amount of time.
#
# You can adjust the behavior by modifying this file.
# For more information, see:
# https://github.com/actions/stale
name: Mark stale issues

on:
schedule:
- cron: '0 0 * * *' # Run every night at midnight

jobs:
stale:

runs-on: ubuntu-latest
permissions:
issues: write
pull-requests: write

steps:
- uses: actions/stale@v5
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
stale-issue-label: 'stale'
exempt-issue-labels: 'category: Discussion','category: Feature Request','deferred','help needed: Open Research Problem','help needed: Request Input from Community','never stale','TODO: Documentation'
days-before-issue-stale: 30
days-before-issue-close: 7
stale-issue-message: 'This issue has been automatically marked as stale because it has not had recent activity. If there are no updates within 7 days it will be closed. You can add the "never stale" tag to prevent the issue from closing this issue.'
close-issue-message: 'Closing due to inactivity'
days-before-pr-stale: -1
days-before-pr-close: -1
6 changes: 5 additions & 1 deletion AUTHORS.txt
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List of Developers for GEOS-Chem, HEMCO, and Related Software
(11 Jul 2023)
(23 May 2024)
===============================================================================

ADAMS, Peter
Expand All @@ -23,6 +23,7 @@ BONILLA, Eimy
BOVY, Benoit
BOWMAN, Kevin
BOYS, Brian
BRANFORD, Simon
BRATTICH, Erika
BREIDER, Tom
BREWER, Jared
Expand Down Expand Up @@ -290,6 +291,7 @@ SUTHERLAND, Bethany
SUTO, Kimito
SZELAG, Monika
TAI, Amos
TANG, Yidan
TANIMOTO, Hiroshi
TANNAHILL, John
TAO, Shu
Expand All @@ -312,6 +314,7 @@ VAN DONKELAAR, Aaron
VAROTSOS, Kostas
VINKEN, Geert
VITT, Francis
VOHRA, Karn
WAGSTROM, Kristina
WALKER, Thomas
WANG, James
Expand Down Expand Up @@ -359,6 +362,7 @@ ZHANG, Li
ZHANG, Lin
ZHANG, Qiang
ZHANG, Yanxu
ZHU, Haihui
ZHU, Lei
ZHU, Liye
ZHUANG, Jiawei
Expand Down
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