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Implemented the van der Waals radii inside the check distance function #51

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jonathan-schoeps
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According to #42 the covalent radii are now used to calculate the minimal bond length instead of a global threshold. Furthermore the scaling factor for the van der Waals radii are accessible via the .toml file and as a flag.

jonathan-schoeps and others added 2 commits October 1, 2024 16:22
Signed-off-by: Jonathan Schöps <s6jtscho@uni-bonn.de>
A print statement was not removed
@jonathan-schoeps jonathan-schoeps added the enhancement New feature or request label Oct 1, 2024
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@marcelmbn marcelmbn left a comment

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Except for the two points mentioned, this looks good to me.

Signed-off-by: Jonathan Schöps <s6jtscho@uni-bonn.de>
marcelmbn
marcelmbn previously approved these changes Oct 2, 2024
Signed-off-by: Jonathan Schöps <s6jtscho@uni-bonn.de>
@jonathan-schoeps jonathan-schoeps merged commit 99a4da6 into grimme-lab:main Oct 2, 2024
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@jonathan-schoeps jonathan-schoeps deleted the dev/dist_covalent_radii branch October 2, 2024 09:42
@marcelmbn marcelmbn mentioned this pull request Oct 2, 2024
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Use covalent radii of the atoms inside the check_distance function
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