Version 1.1.5

• Fix typo in GithubActions Docker workflow

Version 1.1.4 - BROKEN

• Fix steps ids in GithubActions Docker workflow

Version 1.1.3 - BROKEN

• Fix missing environment variable in GithubActions Docker workflow

Version 1.1.2 - BROKEN

• Fix syntax in GithubActions Docker workflow

Version 1.1.1 - BROKEN

• Add image testing steps in GithubActions Docker workflow
• Add missing pysam dependencies in Docker image (fix #80)

Version 1.1.0

Fixes and improvements:

• Fix median aggregation - close #69
• Ignore unmapped reads when reading input file - #68

Version 1.0.0

Major release

Main changes:

• Rename sashimi plot script
• Change License from GPL3 to MIT

Fixes and improvements:

• Random arcs position to avoid overlapping - #11, update examples
• Add padding between junction arcs to avoid overlapping - #11
• Improve -j combined with -M and -S/-s - fix #62
• Read gzipped gtf in text mode - fix #60

Others:

• Add development instructions
• Update CI checksums
• Update GHA CI workflow to run for all branches on push
• Remove tox config, use pytest and add python version matrix
• Remove [ci skip] if logic from CI workflow as GHA now supports it

Version 0.6.0

• Get transcript_id from transcript/exon only, handle error when absent - fix #2, #46
• Add support for gzipped gtf files - fix #47
• Improve split logic in gtf tags - fix #48
• Replace samtools calls with pysam - close #53
• Prevent --fix-y-scale from dropping count labels - fix #55
• Add more versions of R and ggplot2 to CI config - #54
• Add debug information - close #56
• Add version information - close #57
• Switch to GitHub actions - close #58
• Add debug mode information in readme
• Update Dockerfile
• Update default versions in Docker image: R 3.6.3 ggplot2 3.3.3

Version 0.5.0

• Update condition for arrow drawing - fix #33
• Use max value for arc y when using aggregation function and add test to CI script - fix #39
• Truncate exons in the limits of annotation track - fix #34
• Change break generation, drop breaks out of range - fix #37
• Show original coordinates in x-axis with shrinked introns - fix #13
• Deduplicate colors in colorize - fix #40
• Warn when a sample has no reads in the query region and continue - fix #38
• Update travis config to use conda and add R and ggplot2 versions - fix #42
• Update ci script with PDF checksum - fix #41
• Set limitsize=FALSE in ggsave - fix #27
• Add option for fixed y-scales - fix #28

Version 0.4.1

• Mark required arguments in parser
• Add unicode support for Python 2 - fix #29
• Allow bam names to start with a number - fix #26
• Clarify palette usage, update example
• Match order of bams and palette - fix #18
• Add info on Galaxy wrapper
• Add option to write junction BED file - close #12