add dorado.def + change version in profile config

envs/singularity/dorado_0.8.0.def

@@ -0,0 +1,29 @@
+BootStrap: docker
+From: ubuntu:22.04
+
+#build image
+#sudo singularity build dorado_0.8.0.simg dorado_0.8.0.def
+#using image
+#singularity exec --no-home dorado_0.8..simg dorado --version
+%environment
+	export RETICULATE_MINICONDA_ENABLED=FALSE #ne pas utiliser de miniconda dans le container
+	LANG=en_US.UTF-8
+	LC_TIME=en_US.UTF-8
+	LC_MONETARY=en_US.UTF-8
+	LC_PAPER=en_US.UTF-8
+	LC_MEASUREMENT=en_US.UTF-8
+	export PATH="/dorado-0.8.0-linux-x64/bin/:$PATH"
+	#export PATH="/usr/local/cuda/bin:$PATH"
+	#export LD_LIBRARY_PATH="/usr/local/cuda-11.1/targets/x86_64-linux/lib:$LD_LIBRARY_PATH"
+
+%post #toutes les lignes de commande qu'on veux qu'il installe
+	echo "Ubuntu version ############"
+	cat /etc/lsb-release #afficher la version de ubuntu qui a été installé
+	apt-get -y update && apt-get -y upgrade
+	#prevent the configuration of timezone data to block the build:
+	ln -fs /usr/share/zoneinfo/Europe/Paris /etc/localtime
+	apt-get install -y tzdata=2024a-0ubuntu0.22.04.1 wget=1.21.2-2ubuntu1.1
+	dpkg-reconfigure --frontend noninteractive tzdata
+
+	wget https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.0-linux-x64.tar.gz
+	tar -xvf dorado-0.8.0-linux-x64.tar.gz

profiles/slurm/config.yaml

@@ -11,4 +11,4 @@ reason: false
 printshellcmds: true
 jobname: "{name}.{jobid}.snakejob"
 use-conda: true
-conda-prefix: /mnt/beegfs/pipelines/bigr_long-reads_bulk/dev/envs/compiled_conda
+conda-prefix: /mnt/beegfs/pipelines/bigr_long-reads_bulk/2.1.0/envs/compiled_conda