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Copyright
Scott.Hazelhurst edited this page May 26, 2017
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Except where otherwise specified, this code is released under the GPL3 licence.
The our config-gen auxiliary script depends on the following code of the Apache Project POI Project.
- poi-3.14.jar
- poi-ooxml.jar
- poi-excelant.jar
- poi-ooxml-schemas-3.14-20160307.jar
- xmlbeans-2.6.0.jar
About h3aGWAS
Getting started
Running pipelines
- Quick Start
- The nextflow config file
- Pipeline options
- The Pipelines
- Affy Calling
- Converting from Illumina Top-Bottom
- PLINK QC pipeline
- Association testing pipeline
- Post-GWAS analysis
Extending pipelines
Getting help