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add Wang24 (#1051)
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* add Wang24

* update variant consensus

* fix isolate mutations

* fix Wang24

* Autogenerated data updated by HIVDB Bot

---------

Co-authored-by: HIVDB Bot <hivdbteam@stanford.edu>
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@KaimingTao @hivdb-bot
KaimingTao and hivdb-bot authored Aug 15, 2024
1 parent ea91a03 commit a4e6b91
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Showing 9 changed files with 753 additions and 1 deletion.
1 change: 1 addition & 0 deletions tables/articles.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -814,3 +814,4 @@ Yang23c,10.1016/S1473-3099(23)00573-X,NULL,"Yang, S",2023,2024-01-26,NULL
Jian23,10.1371/journal.ppat.1011868,NULL,"Yang, S",2023,2024-01-26,NULL
Qu23b,10.1016/j.cell.2023.12.026,NULL,"Yang, S",2023,2024-01-26,NULL
FDA24,,https://www.fda.gov/media/177067/download,FDA,2024,2024-03-01,NULL
Wang24,10.1101/2024.08.12.607496,NULL,"Wang, Q",2024,2024-08-15,NULL
309 changes: 309 additions & 0 deletions tables/isolate_mutations.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -26090,3 +26090,312 @@ JN.1.11.1 Spike,S,954,H,NULL,NULL
JN.1.11.1 Spike,S,969,K,NULL,NULL
JN.1.11.1 Spike,S,1104,L,NULL,NULL
JN.1.11.1 Spike,S,1143,L,NULL,NULL
KP.2 Spike,S,19,I,NULL,NULL
KP.2 Spike,S,21,T,NULL,NULL
KP.2 Spike,S,50,L,NULL,NULL
KP.2 Spike,S,69,del,NULL,NULL
KP.2 Spike,S,70,del,NULL,NULL
KP.2 Spike,S,127,F,NULL,NULL
KP.2 Spike,S,142,D,NULL,NULL
KP.2 Spike,S,144,del,NULL,NULL
KP.2 Spike,S,157,S,NULL,NULL
KP.2 Spike,S,158,G,NULL,NULL
KP.2 Spike,S,211,I,NULL,NULL
KP.2 Spike,S,212,del,NULL,NULL
KP.2 Spike,S,213,G,NULL,NULL
KP.2 Spike,S,216,F,NULL,NULL
KP.2 Spike,S,245,N,NULL,NULL
KP.2 Spike,S,264,D,NULL,NULL
KP.2 Spike,S,332,V,NULL,NULL
KP.2 Spike,S,339,H,NULL,NULL
KP.2 Spike,S,346,T,NULL,NULL
KP.2 Spike,S,356,T,NULL,NULL
KP.2 Spike,S,371,F,NULL,NULL
KP.2 Spike,S,373,P,NULL,NULL
KP.2 Spike,S,375,F,NULL,NULL
KP.2 Spike,S,376,A,NULL,NULL
KP.2 Spike,S,403,K,NULL,NULL
KP.2 Spike,S,405,N,NULL,NULL
KP.2 Spike,S,408,S,NULL,NULL
KP.2 Spike,S,417,N,NULL,NULL
KP.2 Spike,S,440,K,NULL,NULL
KP.2 Spike,S,445,H,NULL,NULL
KP.2 Spike,S,446,S,NULL,NULL
KP.2 Spike,S,450,D,NULL,NULL
KP.2 Spike,S,452,W,NULL,NULL
KP.2 Spike,S,455,S,NULL,NULL
KP.2 Spike,S,456,L,NULL,NULL
KP.2 Spike,S,460,K,NULL,NULL
KP.2 Spike,S,477,N,NULL,NULL
KP.2 Spike,S,478,K,NULL,NULL
KP.2 Spike,S,481,K,NULL,NULL
KP.2 Spike,S,483,del,NULL,NULL
KP.2 Spike,S,484,K,NULL,NULL
KP.2 Spike,S,486,P,NULL,NULL
KP.2 Spike,S,498,R,NULL,NULL
KP.2 Spike,S,501,Y,NULL,NULL
KP.2 Spike,S,505,H,NULL,NULL
KP.2 Spike,S,554,K,NULL,NULL
KP.2 Spike,S,570,V,NULL,NULL
KP.2 Spike,S,614,G,NULL,NULL
KP.2 Spike,S,621,S,NULL,NULL
KP.2 Spike,S,655,Y,NULL,NULL
KP.2 Spike,S,679,K,NULL,NULL
KP.2 Spike,S,681,R,NULL,NULL
KP.2 Spike,S,764,K,NULL,NULL
KP.2 Spike,S,796,Y,NULL,NULL
KP.2 Spike,S,939,F,NULL,NULL
KP.2 Spike,S,954,H,NULL,NULL
KP.2 Spike,S,969,K,NULL,NULL
KP.2 Spike,S,1104,L,NULL,NULL
KP.2 Spike,S,1143,L,NULL,NULL
KP.3 Spike,S,19,I,NULL,NULL
KP.3 Spike,S,21,T,NULL,NULL
KP.3 Spike,S,24,S,NULL,NULL
KP.3 Spike,S,25,del,NULL,NULL
KP.3 Spike,S,26,del,NULL,NULL
KP.3 Spike,S,27,del,NULL,NULL
KP.3 Spike,S,50,L,NULL,NULL
KP.3 Spike,S,69,del,NULL,NULL
KP.3 Spike,S,70,del,NULL,NULL
KP.3 Spike,S,127,F,NULL,NULL
KP.3 Spike,S,142,D,NULL,NULL
KP.3 Spike,S,144,del,NULL,NULL
KP.3 Spike,S,157,S,NULL,NULL
KP.3 Spike,S,158,G,NULL,NULL
KP.3 Spike,S,211,I,NULL,NULL
KP.3 Spike,S,212,del,NULL,NULL
KP.3 Spike,S,213,G,NULL,NULL
KP.3 Spike,S,216,F,NULL,NULL
KP.3 Spike,S,245,N,NULL,NULL
KP.3 Spike,S,264,D,NULL,NULL
KP.3 Spike,S,332,V,NULL,NULL
KP.3 Spike,S,339,H,NULL,NULL
KP.3 Spike,S,356,T,NULL,NULL
KP.3 Spike,S,371,F,NULL,NULL
KP.3 Spike,S,373,P,NULL,NULL
KP.3 Spike,S,375,F,NULL,NULL
KP.3 Spike,S,376,A,NULL,NULL
KP.3 Spike,S,403,K,NULL,NULL
KP.3 Spike,S,405,N,NULL,NULL
KP.3 Spike,S,408,S,NULL,NULL
KP.3 Spike,S,417,N,NULL,NULL
KP.3 Spike,S,440,K,NULL,NULL
KP.3 Spike,S,445,H,NULL,NULL
KP.3 Spike,S,446,S,NULL,NULL
KP.3 Spike,S,450,D,NULL,NULL
KP.3 Spike,S,452,W,NULL,NULL
KP.3 Spike,S,455,S,NULL,NULL
KP.3 Spike,S,456,L,NULL,NULL
KP.3 Spike,S,460,K,NULL,NULL
KP.3 Spike,S,477,N,NULL,NULL
KP.3 Spike,S,478,K,NULL,NULL
KP.3 Spike,S,481,K,NULL,NULL
KP.3 Spike,S,483,del,NULL,NULL
KP.3 Spike,S,484,K,NULL,NULL
KP.3 Spike,S,486,P,NULL,NULL
KP.3 Spike,S,493,E,NULL,NULL
KP.3 Spike,S,498,R,NULL,NULL
KP.3 Spike,S,501,Y,NULL,NULL
KP.3 Spike,S,505,H,NULL,NULL
KP.3 Spike,S,554,K,NULL,NULL
KP.3 Spike,S,570,V,NULL,NULL
KP.3 Spike,S,614,G,NULL,NULL
KP.3 Spike,S,621,S,NULL,NULL
KP.3 Spike,S,655,Y,NULL,NULL
KP.3 Spike,S,679,K,NULL,NULL
KP.3 Spike,S,681,R,NULL,NULL
KP.3 Spike,S,764,K,NULL,NULL
KP.3 Spike,S,796,Y,NULL,NULL
KP.3 Spike,S,939,F,NULL,NULL
KP.3 Spike,S,954,H,NULL,NULL
KP.3 Spike,S,969,K,NULL,NULL
KP.3 Spike,S,1104,L,NULL,NULL
KP.3 Spike,S,1143,L,NULL,NULL
KP.2.3 Spike,S,19,I,NULL,NULL
KP.2.3 Spike,S,21,T,NULL,NULL
KP.2.3 Spike,S,31,del,NULL,NULL
KP.2.3 Spike,S,50,L,NULL,NULL
KP.2.3 Spike,S,69,del,NULL,NULL
KP.2.3 Spike,S,70,del,NULL,NULL
KP.2.3 Spike,S,127,F,NULL,NULL
KP.2.3 Spike,S,142,del,NULL,NULL
KP.2.3 Spike,S,144,del,NULL,NULL
KP.2.3 Spike,S,146,Q,NULL,NULL
KP.2.3 Spike,S,157,S,NULL,NULL
KP.2.3 Spike,S,158,G,NULL,NULL
KP.2.3 Spike,S,211,I,NULL,NULL
KP.2.3 Spike,S,212,del,NULL,NULL
KP.2.3 Spike,S,213,G,NULL,NULL
KP.2.3 Spike,S,216,F,NULL,NULL
KP.2.3 Spike,S,245,N,NULL,NULL
KP.2.3 Spike,S,264,del,NULL,NULL
KP.2.3 Spike,S,332,V,NULL,NULL
KP.2.3 Spike,S,339,H,NULL,NULL
KP.2.3 Spike,S,346,T,NULL,NULL
KP.2.3 Spike,S,356,T,NULL,NULL
KP.2.3 Spike,S,371,F,NULL,NULL
KP.2.3 Spike,S,373,P,NULL,NULL
KP.2.3 Spike,S,375,F,NULL,NULL
KP.2.3 Spike,S,376,A,NULL,NULL
KP.2.3 Spike,S,403,K,NULL,NULL
KP.2.3 Spike,S,405,N,NULL,NULL
KP.2.3 Spike,S,408,S,NULL,NULL
KP.2.3 Spike,S,417,N,NULL,NULL
KP.2.3 Spike,S,440,K,NULL,NULL
KP.2.3 Spike,S,445,H,NULL,NULL
KP.2.3 Spike,S,446,S,NULL,NULL
KP.2.3 Spike,S,450,del,NULL,NULL
KP.2.3 Spike,S,452,W,NULL,NULL
KP.2.3 Spike,S,455,S,NULL,NULL
KP.2.3 Spike,S,456,L,NULL,NULL
KP.2.3 Spike,S,460,K,NULL,NULL
KP.2.3 Spike,S,477,N,NULL,NULL
KP.2.3 Spike,S,478,K,NULL,NULL
KP.2.3 Spike,S,481,K,NULL,NULL
KP.2.3 Spike,S,486,P,NULL,NULL
KP.2.3 Spike,S,498,R,NULL,NULL
KP.2.3 Spike,S,501,Y,NULL,NULL
KP.2.3 Spike,S,505,H,NULL,NULL
KP.2.3 Spike,S,554,K,NULL,NULL
KP.2.3 Spike,S,570,V,NULL,NULL
KP.2.3 Spike,S,614,G,NULL,NULL
KP.2.3 Spike,S,621,S,NULL,NULL
KP.2.3 Spike,S,655,Y,NULL,NULL
KP.2.3 Spike,S,679,K,NULL,NULL
KP.2.3 Spike,S,681,R,NULL,NULL
KP.2.3 Spike,S,764,K,NULL,NULL
KP.2.3 Spike,S,796,Y,NULL,NULL
KP.2.3 Spike,S,939,F,NULL,NULL
KP.2.3 Spike,S,954,H,NULL,NULL
KP.2.3 Spike,S,969,K,NULL,NULL
KP.2.3 Spike,S,1104,L,NULL,NULL
KP.2.3 Spike,S,1143,L,NULL,NULL
KP.3.1.1 Spike,S,19,I,NULL,NULL
KP.3.1.1 Spike,S,21,T,NULL,NULL
KP.3.1.1 Spike,S,24,S,NULL,NULL
KP.3.1.1 Spike,S,25,del,NULL,NULL
KP.3.1.1 Spike,S,26,del,NULL,NULL
KP.3.1.1 Spike,S,27,del,NULL,NULL
KP.3.1.1 Spike,S,31,del,NULL,NULL
KP.3.1.1 Spike,S,50,L,NULL,NULL
KP.3.1.1 Spike,S,69,del,NULL,NULL
KP.3.1.1 Spike,S,70,del,NULL,NULL
KP.3.1.1 Spike,S,127,F,NULL,NULL
KP.3.1.1 Spike,S,142,del,NULL,NULL
KP.3.1.1 Spike,S,144,del,NULL,NULL
KP.3.1.1 Spike,S,157,S,NULL,NULL
KP.3.1.1 Spike,S,158,G,NULL,NULL
KP.3.1.1 Spike,S,211,I,NULL,NULL
KP.3.1.1 Spike,S,212,del,NULL,NULL
KP.3.1.1 Spike,S,213,G,NULL,NULL
KP.3.1.1 Spike,S,216,F,NULL,NULL
KP.3.1.1 Spike,S,245,N,NULL,NULL
KP.3.1.1 Spike,S,264,del,NULL,NULL
KP.3.1.1 Spike,S,332,V,NULL,NULL
KP.3.1.1 Spike,S,339,H,NULL,NULL
KP.3.1.1 Spike,S,356,T,NULL,NULL
KP.3.1.1 Spike,S,371,F,NULL,NULL
KP.3.1.1 Spike,S,373,P,NULL,NULL
KP.3.1.1 Spike,S,375,F,NULL,NULL
KP.3.1.1 Spike,S,376,A,NULL,NULL
KP.3.1.1 Spike,S,403,K,NULL,NULL
KP.3.1.1 Spike,S,405,N,NULL,NULL
KP.3.1.1 Spike,S,408,S,NULL,NULL
KP.3.1.1 Spike,S,417,N,NULL,NULL
KP.3.1.1 Spike,S,440,K,NULL,NULL
KP.3.1.1 Spike,S,445,H,NULL,NULL
KP.3.1.1 Spike,S,446,S,NULL,NULL
KP.3.1.1 Spike,S,450,del,NULL,NULL
KP.3.1.1 Spike,S,452,W,NULL,NULL
KP.3.1.1 Spike,S,455,S,NULL,NULL
KP.3.1.1 Spike,S,456,L,NULL,NULL
KP.3.1.1 Spike,S,460,K,NULL,NULL
KP.3.1.1 Spike,S,477,N,NULL,NULL
KP.3.1.1 Spike,S,478,K,NULL,NULL
KP.3.1.1 Spike,S,481,K,NULL,NULL
KP.3.1.1 Spike,S,483,del,NULL,NULL
KP.3.1.1 Spike,S,484,K,NULL,NULL
KP.3.1.1 Spike,S,486,P,NULL,NULL
KP.3.1.1 Spike,S,493,E,NULL,NULL
KP.3.1.1 Spike,S,498,R,NULL,NULL
KP.3.1.1 Spike,S,501,Y,NULL,NULL
KP.3.1.1 Spike,S,505,H,NULL,NULL
KP.3.1.1 Spike,S,554,K,NULL,NULL
KP.3.1.1 Spike,S,570,V,NULL,NULL
KP.3.1.1 Spike,S,614,G,NULL,NULL
KP.3.1.1 Spike,S,621,S,NULL,NULL
KP.3.1.1 Spike,S,655,Y,NULL,NULL
KP.3.1.1 Spike,S,679,K,NULL,NULL
KP.3.1.1 Spike,S,681,R,NULL,NULL
KP.3.1.1 Spike,S,764,K,NULL,NULL
KP.3.1.1 Spike,S,796,Y,NULL,NULL
KP.3.1.1 Spike,S,939,F,NULL,NULL
KP.3.1.1 Spike,S,954,H,NULL,NULL
KP.3.1.1 Spike,S,969,K,NULL,NULL
KP.3.1.1 Spike,S,1104,L,NULL,NULL
KP.3.1.1 Spike,S,1143,L,NULL,NULL
LB.1 Spike,S,19,I,NULL,NULL
LB.1 Spike,S,21,T,NULL,NULL
LB.1 Spike,S,24,S,NULL,NULL
LB.1 Spike,S,25,del,NULL,NULL
LB.1 Spike,S,26,del,NULL,NULL
LB.1 Spike,S,27,del,NULL,NULL
LB.1 Spike,S,31,del,NULL,NULL
LB.1 Spike,S,50,L,NULL,NULL
LB.1 Spike,S,69,del,NULL,NULL
LB.1 Spike,S,70,del,NULL,NULL
LB.1 Spike,S,127,F,NULL,NULL
LB.1 Spike,S,142,D,NULL,NULL
LB.1 Spike,S,144,del,NULL,NULL
LB.1 Spike,S,157,S,NULL,NULL
LB.1 Spike,S,158,G,NULL,NULL
LB.1 Spike,S,183,H,NULL,NULL
LB.1 Spike,S,211,I,NULL,NULL
LB.1 Spike,S,212,del,NULL,NULL
LB.1 Spike,S,213,G,NULL,NULL
LB.1 Spike,S,216,F,NULL,NULL
LB.1 Spike,S,245,N,NULL,NULL
LB.1 Spike,S,264,D,NULL,NULL
LB.1 Spike,S,332,V,NULL,NULL
LB.1 Spike,S,339,H,NULL,NULL
LB.1 Spike,S,346,T,NULL,NULL
LB.1 Spike,S,356,T,NULL,NULL
LB.1 Spike,S,371,F,NULL,NULL
LB.1 Spike,S,373,P,NULL,NULL
LB.1 Spike,S,375,F,NULL,NULL
LB.1 Spike,S,376,A,NULL,NULL
LB.1 Spike,S,403,K,NULL,NULL
LB.1 Spike,S,405,N,NULL,NULL
LB.1 Spike,S,408,S,NULL,NULL
LB.1 Spike,S,417,N,NULL,NULL
LB.1 Spike,S,440,K,NULL,NULL
LB.1 Spike,S,445,H,NULL,NULL
LB.1 Spike,S,446,S,NULL,NULL
LB.1 Spike,S,450,D,NULL,NULL
LB.1 Spike,S,452,W,NULL,NULL
LB.1 Spike,S,455,S,NULL,NULL
LB.1 Spike,S,456,L,NULL,NULL
LB.1 Spike,S,460,K,NULL,NULL
LB.1 Spike,S,477,N,NULL,NULL
LB.1 Spike,S,478,K,NULL,NULL
LB.1 Spike,S,481,K,NULL,NULL
LB.1 Spike,S,483,del,NULL,NULL
LB.1 Spike,S,484,K,NULL,NULL
LB.1 Spike,S,486,P,NULL,NULL
LB.1 Spike,S,498,R,NULL,NULL
LB.1 Spike,S,501,Y,NULL,NULL
LB.1 Spike,S,505,H,NULL,NULL
LB.1 Spike,S,554,K,NULL,NULL
LB.1 Spike,S,570,V,NULL,NULL
LB.1 Spike,S,614,G,NULL,NULL
LB.1 Spike,S,621,S,NULL,NULL
LB.1 Spike,S,655,Y,NULL,NULL
LB.1 Spike,S,679,K,NULL,NULL
LB.1 Spike,S,681,R,NULL,NULL
LB.1 Spike,S,764,K,NULL,NULL
LB.1 Spike,S,796,Y,NULL,NULL
LB.1 Spike,S,939,F,NULL,NULL
LB.1 Spike,S,954,H,NULL,NULL
LB.1 Spike,S,969,K,NULL,NULL
LB.1 Spike,S,1143,L,NULL,NULL
5 changes: 5 additions & 0 deletions tables/isolates.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -1659,3 +1659,8 @@ EU.1.1 Spike,EU.1.1,FALSE,NULL,NULL,NULL,TRUE
HK.3 Spike,HK.3,FALSE,NULL,NULL,NULL,TRUE
JD.1.1 Spike,JD.1.1,FALSE,NULL,NULL,NULL,TRUE
JN.1.11.1 Spike,JN.1.11.1,FALSE,NULL,NULL,NULL,TRUE
KP.2 Spike,KP.2,FALSE,NULL,NULL,NULL,TRUE
KP.3 Spike,KP.3,FALSE,NULL,NULL,NULL,TRUE
KP.2.3 Spike,KP.2.3,FALSE,NULL,NULL,NULL,TRUE
KP.3.1.1 Spike,KP.3.1.1,FALSE,NULL,NULL,NULL,TRUE
LB.1 Spike,LB.1,FALSE,NULL,NULL,NULL,TRUE
7 changes: 7 additions & 0 deletions tables/ref_isolate_pairs/wang24-pair.csv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
ref_name,control_iso_name,iso_name
Wang24,B.1 Spike,JN.1 Spike
Wang24,B.1 Spike,KP.2 Spike
Wang24,B.1 Spike,KP.3 Spike
Wang24,B.1 Spike,KP.2.3 Spike
Wang24,B.1 Spike,KP.3.1.1 Spike
Wang24,B.1 Spike,LB.1 Spike
2 changes: 2 additions & 0 deletions tables/rx_antibodies/wang24-mab.csv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
ref_name,rx_name,ab_name
Wang24,Pemivibart,Pemgarda
8 changes: 8 additions & 0 deletions tables/rx_potency/wang24-pot.csv
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Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
ref_name,rx_name,iso_name,section,assay_name,potency_type,potency,cumulative_count,potency_upper_limit,potency_lower_limit,potency_unit,date_added
Wang24,Pemivibart,B.1 Spike,Estimate,Pseudovirus,IC50,30,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,JN.1 Spike,Figure 1B,Pseudovirus,IC50,185,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,KP.2 Spike,Figure 1B,Pseudovirus,IC50,210,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,KP.3 Spike,Figure 1B,Pseudovirus,IC50,709,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,KP.2.3 Spike,Figure 1B,Pseudovirus,IC50,708,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,KP.3.1.1 Spike,Figure 1B,Pseudovirus,IC50,6047,1,10000,1,ng/ml,2024-08-15
Wang24,Pemivibart,LB.1 Spike,Figure 1B,Pseudovirus,IC50,501,1,10000,1,ng/ml,2024-08-15
1 change: 1 addition & 0 deletions tables/treatments.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -7210,6 +7210,7 @@ Wang23c,COV2-2130
Wang23c,10-40
Wang23c,COV2-2196+COV2-2130
Wang23c,Brii-196+Brii-198
Wang24,Pemivibart
Weisblum20,C121
Weisblum20,C135
Weisblum20,C144
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